KEGG   Calonectris borealis (Cory's shearwater): 142073816
Entry
142073816         CDS       T11211                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
cbor  Calonectris borealis (Cory's shearwater)
Pathway
cbor04510  Focal adhesion
cbor04512  ECM-receptor interaction
cbor04518  Integrin signaling
Brite
KEGG Orthology (KO) [BR:cbor00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    142073816 (COL2A1)
   04518 Integrin signaling
    142073816 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    142073816 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cbor00536]
    142073816 (COL2A1)
Glycosaminoglycan binding proteins [BR:cbor00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   142073816 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI VWC VWC2L_2nd
Other DBs
NCBI-GeneID: 142073816
NCBI-ProteinID: XP_074990132
LinkDB
Position
30:complement(2260577..2280044)
AA seq 1485 aa
MPGRRPLRLAAALAILLLAAVAAQDRDLPEAGSCLQDGQSYSDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPVCPTEQPSGQPGPKGQKGEPGDIKDVVGPRGPP
GPQGPAGEQGKRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ
MAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGPR
GPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA
GAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPA
GAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSA
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAP
GPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPK
GATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVM
GFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS
GFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP
GTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD
GARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGAD
GQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGED
GPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPV
GPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPT
GKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLP
GPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPP
GNPGPPGPPGPPGTGIDMSAFAGLGQVEKGPDPIRYMRADEAAGSLRQHDVEVDATLKSL
NNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGET
CVYPNPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTANIQMTFLRLLS
TEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHT
GKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq 4458 nt   +upstreamnt  +downstreamnt
atgcccggccgccgcccgctccgcctcgccgccgccctcgccatcctcctcctcgccgcc
gtcgccgcacaggaccgagacctccccgaagcaggcagctgcctgcaggacgggcagagc
tatagcgataaggacgtatggaagccggagccgtgccgtatctgcgtgtgcgacacgggg
accgtcctctgcgacgagatcatctgcgaggagctgcgggactgccccagccccgaaatc
cccttcggcgaatgctgccccgtctgccccaccgagcagcccagcgggcaacctggcccc
aagggacagaagggcgaacccggtgacattaaagatgtcgtaggaccccgagggcctccg
ggaccgcagggcccggcaggcgagcagggaaaacgaggggaccgcggcgagaagggggag
aagggtgctcccggcccccggggcagggatggagaacctggcacccctggaaatcccggc
ccccctggcccccccggacctcctggcccccccggccttggtgggaacttcgcggctcag
atggcggggggcttcgacgagaaggctggaggcgcgcagatgggcgtcatgcagggaccc
atgggtcccatgggaccccgcggcccccccggaccttccggtgctcccggaccccaagga
tttcaaggcaaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccccgg
ggaccaccgggacctcctgggaagcccggggatgacggcgagaccggcaaacccggcaaa
tccggcgagcgcggcccccccggcccccagggtgctcgtggcttccccgggacacccggt
ctgcccggagtgaaaggccaccggggttaccccggcttggacggtgccaagggagaggca
ggggctcctggagccaagggcgaatccggctcccccggcgagaacggctcccccggcccc
atgggtccccgcgggctgcccggagagagaggacgtcccggcccctccggcgctgcgggt
gctcgtggcaacgatggtctccccggcccggctggaccccctggacctgtcggcccggcc
ggagcccctggcttccccggcgcccccggctcaaagggtgaagctggtcccaccggcgca
cgaggtcccgagggtgcccagggcccccgcggtgaatccggcacccccggctctcctggc
cccgccggcgcccccggtaacccagggactgacggcattcccggggcgaagggctcggcg
ggcgccccgggcatcgctggcgctccaggcttccccggcccccgcggcccgcccggaccc
cagggtgccaccggcccgctgggacccaagggacagacgggagaacccggcatcgcgggc
ttcaaaggcgaacaaggaccgaagggcgagacgggacccgcaggaccccaaggtgccccc
gggccggctggtgaggaaggcaagagaggagcccgcggtgaacccggtgctgccggcccc
gtgggaccacctggagagaggggggctcccggcaatcgcggcttccccgggcaggacggg
ctggctggacccaagggtgctccgggcgagcgcggccccgccggcctggcgggtcccaag
ggagccaccggcgaccccgggcgccccggagagcccgggctgcccggagccaggggtctc
accggccgcccgggcgacgctggtcctcaaggcaaagtcggcccaaccggtgctcccggc
gaggacggccgccccggcccccccggcccgcagggtgctcgcggccagcccggcgtgatg
ggtttccccggtcccaaaggtgctaatggcgagcctggaaaagccggtgagaaaggactc
cccggtgccccggggctgcggggtctccctggcaaggacggtgagacgggagctgccggc
cccccgggacctgccggtcccgcgggcgagaggggagaacaaggagcccccggtccctcc
ggcttccagggcctgcccgggccaccaggtccccccggagagagcggcaaacctggagat
cagggtgttcccggagaagccggtgcccccggtctcgtcggtcccagaggtgaacgtggc
ttccccggtgaacgtggctctcccggcgcacaagggctgcaaggtccccgggggctccct
ggcacgccgggcaccgacggacccaagggtgcaaccggaccggccggccccaacggcgcc
cagggtcccccggggctgcagggaatgcccggcgagagaggagcagccggcattgccggt
cccaagggagaccggggagacgtcggagagaagggccccgagggagcccccggaaaggac
ggcgcacgcggtctgacgggtcccatcggtccccccggccctgctggccccaacggcgag
aagggtgaatccggtcctcctggtccatccggcgctgccggtgcccgcggtgcccctggc
gagcgcggtgagcccggtgcgcccggtcccgccggatttgccggtcccccgggtgccgac
gggcaacccggtgccaaaggcgaacaaggagagcccgggcagaagggtgacgctggcgct
cccggtccccaaggtccctctggcgcacctggcccgcagggtccaactggagtaactggt
cccaaaggagcccggggtgctcagggcccccctggagctaccggattccccggcgccgcc
ggccgtgtgggaccacccggccctaatggtaacccaggtccccccggtccccccggctct
gctggcaaagatggtcccaagggtgctcgcggtgatgccggtcccccgggccgtgccggt
gaccccggtctccaaggccctgccggtccccctggcgagaaaggcgaacccggcgaggat
ggccccgcgggtcctgatggtccccccggtccccaaggtttggcaggacagcgcggcatc
gtcggtcttcccggacagcgcggcgagagaggcttccccgggctgccggggccatcgggc
gaacctgggaaacaaggagcacccggctctgcgggtgaccgtggcccccccggccccgtg
ggtccccccggtctgacgggtcctgccggcgaacctgggcgcgagggtaaccccggctct
gatggaccccccggcagagacggcgcagccggcgtgaagggtgatcgcggcgagaccggt
cccgtgggtgcccccggcgctcccggtgcccctggcgctcccggccccgtcggtcccacc
ggcaaacaaggagacagaggcgagacgggtgcacaaggtcccatgggtccctccggtcct
gctggcgctcgaggcatgccgggtccccaggggcctcgcggtgacaagggtgagacggga
gaggctggagagagagggctgaagggccaccgtggcttcaccggtctgcagggtcttcct
ggaccacccggtccttctggagaccaaggtgctgctggtcccgcgggtccctccggtccc
aggggtccccccggccccgtcggcccctctggcaaagacggctccaacggcatgcccggc
cccatcggtcctcccggcccccgcggacgaagcggcgaaccaggtcctgcgggtcctccc
ggaaacccaggtccccccggtcctcccggcccccccggcaccggcatcgacatgtcggct
tttgctggcctgggtcaagtggagaagggtcccgaccccatccgctacatgcgagcggac
gaggccgccggcagcctgcgacagcacgacgtcgaggtggacgccacgctcaagtccctc
aacaaccagattgagagcatccgcagccccgagggctccaagaagaacccagccaggacc
tgtcgcgacatcaagctttgccatcccgagtggaagagcggagactactggatcgacccg
aaccagggctgcactttggacgccatcaaagttttctgcaatatggaaacgggcgagacc
tgcgtctaccccaaccccagtagcatccccaagaagaactggtggaccagcaagaccaaa
gacaagaagcacgtctggttcgcagagaccattaacggcggtttccactttagctacggc
gatgaagacctggctcccaacaccgccaacatccagatgaccttcctccgcctcctgtcc
accgaaggctcccagaacgtcacttaccactgcaagaacagcatcgcctacatggacgag
gagacgggcaacctgaagaaagccatcctcatccagggatccaacgacgtggagatcaga
gccgagggcaacagcaggttcacgtacagcgtcttggaggacggttgcacgaaacacact
ggcaaatggggcaagacagtcattgagtaccgatcgcagaagacctcgcgcctgcccatt
gtagatattgcacctatggacattggtggagccgatcaggagtttggcgtggatattggc
ccagtctgcttcttgtaa

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