Calonectris borealis (Cory's shearwater): 142074485
Help
Entry
142074485 CDS
T11211
Symbol
NXF1
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03008
Ribosome biogenesis in eukaryotes
cbor03013
Nucleocytoplasmic transport
cbor03015
mRNA surveillance pathway
cbor05164
Influenza A
cbor05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142074485 (NXF1)
03015 mRNA surveillance pathway
142074485 (NXF1)
03008 Ribosome biogenesis in eukaryotes
142074485 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
142074485 (NXF1)
05168 Herpes simplex virus 1 infection
142074485 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142074485 (NXF1)
03009 Ribosome biogenesis [BR:
cbor03009
]
142074485 (NXF1)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
142074485 (NXF1)
mRNA cycle factors
Stress granule specific factors
142074485 (NXF1)
Ribosome biogenesis [BR:
cbor03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
142074485 (NXF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_NXF2
LRR_8
LRR_4
UBA_8
Citrulline_exp
Motif
Other DBs
NCBI-GeneID:
142074485
NCBI-ProteinID:
XP_074991237
LinkDB
All DBs
Position
37:328551..337212
Genome browser
AA seq
527 aa
AA seq
DB search
MPCTGTQLHPAQLRHTRPGQGCGRSSPSGQIPYGKKYDKSWLLSSIQNLCSVPFTPVEFH
YDHNRAQFYVEDATTASALKQVSRNQITDRDNYKVVIIINSSAPPQSLQNELKPEEIEQL
KLCMSKRYDGSQRALDLKSLRVDPDLVSQSIDVXLNQRSCMLVVLRIIEDNIPELQSLNL
SSNKLYRLDDLSELAQKAAGLKILDLSRNELKSDRELDKVKGLKLEELWLDGNPLCNAFR
DQSTYISSVRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGSDDLKVLVLRFLQ
QYYSIYDSSDRQGLLDAYHDGAXCSLSIPFGPQNPPRNSLNEYFKDSRNVKKLKDPPMRF
KLLKHTRLNVVAFLNELPKTQHDINSFVVDICAQTNTLLCFAVHGIFKEVDGKSRDSVRA
FTRMFIAVPAGNTGLCIVNDELFVRNATTEEIRKAFLMPAPTPSSSPVPTLSAEQQEMLA
AFSMQSGMNLEWSQKCLQDNDWDYGRAGQVFTQLKLEGKIPEVAFLK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgccctgcaccggaacgcagctgcatcctgcccagctgcggcacacgcggcctgggcag
ggctgtggccgttcctccccgagcggtcagatcccatacgggaagaaatacgacaaatcg
tggctgctgagctccatccagaacctttgcagcgtccccttcactcccgttgagttccac
tacgaccacaaccgggcccagttctacgtggaagacgccaccaccgccagcgccctcaaa
caggtttcccgtaatcaaatcaccgaccgggataactacaaggtggtgataattatcaat
tcgtcggctccgcctcaatccctgcaaaacgagctgaaaccggaggagattgagcaactg
aagctctgcatgagcaagagatacgacggttcgcaacgggcgttggacctcaagagcctc
cgcgtcgacccggatttagtgtcgcagagcatcgacgtgntgctgaaccagcggagctgc
atgctggtcgtgctgcgcatcattgaggacaacatccccgagctgcagtccctcaacctg
agcagcaacaagctctaccgcctggacgacctgtccgagctggcacagaaagccgccggc
ctcaaaatcctcgatctctctcgtaacgagctgaaatcggatcgggagctggataaggtg
aaagggctcaaactagaggagctttggctcgatggaaacccgctttgcaacgcttttcgg
gaccagtctacctacatcagctccgtcagagagcgcttcccgaagctgctgcgcctggac
ggccacgagctccctccacccatcgccttcgatgtggaggcccccacgacgctgcccccc
tgcaagggcagctacttcggctcagacgacctgaaagtcttggtgctgcggttcttacaa
cagtattattccatctacgattccagcgacaggcaggggctgctggacgcttaccacgac
ggagccntctgctccctcagcatccccttcgggccccaaaacccccccaggaacagcttg
aacgaatatttcaaggacagcagaaacgtgaagaagctgaaagacccccccatgcgcttc
aaactgctcaaacacacgcgactcaacgtggtggctttccttaacgagctccccaagacc
caacacgacatcaattccttcgtggtggacatctgcgcgcagacgaacacgctgttgtgt
tttgccgtccacgggatcttcaaggaagtggacggcaaatcccgagactcggtgcgcgcc
ttcactcggatgtttatcgccgtgccggccggcaacaccggtctctgcatcgttaacgac
gagctcttcgtccgtaacgccaccaccgaggagatccgcaaagccttcctcatgccagcg
cccaccccttcctccagccccgtccccacgctctccgccgagcagcaggagatgctggcc
gccttctccatgcaatcgggcatgaacctcgagtggtcccagaagtgcctgcaggataac
gactgggactacggccgggccgggcaggtcttcacccagctgaagctggaaggcaagatc
cccgaagtggcgtttctcaagtga
DBGET
integrated database retrieval system
