Calonectris borealis (Cory's shearwater): 142075397
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Entry
142075397 CDS
T11211
Symbol
RNF38
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38 isoform X1
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cbor04121
]
142075397 (RNF38)
Enzymes [BR:
cbor01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142075397 (RNF38)
Ubiquitin system [BR:
cbor04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142075397 (RNF38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
VPS18_RING_C
zf-RING_UBOX
zf-RING-like
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
142075397
NCBI-ProteinID:
XP_074992746
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All DBs
Position
Z:29810138..29947472
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AA seq
660 aa
AA seq
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MAVAARSAPRAAHSDACFLAPARRRDRGAAPRGEESGSERPQPLRQASEAGRHRRWVASS
AAPFLPSFSSSPPPPPASSRASSPAAEAAATSTSPSGACLLPAPPGTRTRSRSGFPGLAM
SGGAARLPPPPALCPPPPPLHGPSLPEPGARSQGRGSPAGHGAPRAAPGARGPPPGNIGT
SFQCHSIHQDHICNDDSDKSEDSPSPKRQRLSHSVFDYTAGSPAPSPPMRPWEMTSNRQP
PLARPSQHHFSGERCNTPARNRRSPPVRRQRTRRDRLSRHNSISQDENYHHLSYGQQQAI
EEPRAFHPPNVSPRMLHPAAHPPQQNAVMVDIHDQIHQGTVPVSYTVTTVAPHGIPLCTG
QHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLLH
PPHISPHHPPHLPPPGQFVPFQAQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHPSTL
PPSAPLQFLTHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPHPYHPSLLPYVLSM
LPVPPAVGPAFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNN
HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgccgcccgctcagcgccccgcgcggcgcactccgacgcctgcttcctcgcc
cccgcccgccggcgggaccgcggcgctgctccgcgcggcgaggagagcggcagcgagcgg
ccccagcccctccgccaggctagcgaggcgggccggcaccgcagatgggtggcttcttcc
gccgcccccttcctgccttccttctcctcctcccctccgccgccccccgcctcctcccgt
gcctcctcccccgctgccgaggccgccgccacctccacctccccctcgggtgcctgcctc
ctcccagcaccccccgggacccgcactcgctcccgctccggcttccccggactcgccatg
agcggcggcgccgctcgcttaccgccgcctcccgccctctgcccgccgccgccgcccctc
cacgggccaagcttgcccgagccgggagcgcgcagccagggccggggtagccccgccggc
cacggcgcaccccgcgccgccccgggcgccagaggcccgccgccaggtaacattggtaca
tcctttcaatgccactcaatccatcaagatcacatttgtaatgatgacagtgacaagagc
gaagacagtcctagtcccaagcgacaacgcctttcccattcagtctttgactatacagca
ggatcaccagccccatcaccgccaatgcgaccatgggagatgacatcaaataggcagcct
cctttggctcggcccagccaacaccacttctcaggggaacgatgcaacacacctgcacga
aacaggaggagtcctcctgttcgacgtcagagaacaaggagagatcgtttgtctagacat
aattccattagccaggatgaaaactatcaccatctctcctatggacagcagcaagcaata
gaagagccccgagcctttcacccaccgaatgtatctcctcgtatgttgcacccagctgct
cacccaccacagcagaatgcagtgatggttgacattcatgatcagatccatcagggcacc
gttcccgtctcatacacagtgacaacggtggctccacatgggataccactttgcacaggc
cagcacatcccagcctgcagtacacagcaggtcccagggtgctcagtggttttcagtggg
cagcaccttccagtctgcagtgtgcctcccccaatgcttcaggcgtgctcagtccagcac
ctacctgtaccatatgcagcatttccacccctcatttctagtgacccattccttttgcat
cctcctcatatctctccacaccaccctcctcacttgcctcctccaggacagttcgttcct
ttccaagcacagcagtcacggtcgccacttcaaaggatagaaaatgaagtagaactgctt
ggagaacatcttcctgtaggaggttttacataccctccctcagcccatccatcaacattg
cctccctcagctcccctccaattcttaacccacgatcctttacaccaggaggtgtcattt
ggtgtaccttacccaccttttatgcctcggagactcacagggcgcagcagataccgatca
cagcagccaataccaccacacccttaccatcccagcctattaccttatgtgctatcaatg
ctcccagtgccacctgcagttggaccagctttcagctttgagttggatgtggaagatggg
gaggtagaaaactatgaggcactgctgaatttggcagaacgtctgggagaagccaaacca
cgaggattgacaaaggcggacattgaacagcttccatcctacaggttcaatccaaacaac
caccagtcagaacagacattgtgtgtggtgtgcatgtgcgattttgagtcaaggcagcta
cttagagtcttaccctgtaaccatgaattccatgccaagtgtgtcgataaatggctgaag
gcaaatcgtacctgcccaatttgtagagctgatgcttcggaagtgcatcgtgattcagaa
tga
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