Calonectris borealis (Cory's shearwater): 142075692
Help
Entry
142075692 CDS
T11211
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142075692 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142075692 (MTREX)
03041 Spliceosome [BR:
cbor03041
]
142075692 (MTREX)
03009 Ribosome biogenesis [BR:
cbor03009
]
142075692 (MTREX)
03016 Transfer RNA biogenesis [BR:
cbor03016
]
142075692 (MTREX)
Enzymes [BR:
cbor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142075692 (MTREX)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
142075692 (MTREX)
Spliceosome [BR:
cbor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142075692 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
142075692 (MTREX)
Ribosome biogenesis [BR:
cbor03009
]
Eukaryotic type
Pre-60S particles
Helicases
142075692 (MTREX)
Transfer RNA biogenesis [BR:
cbor03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
142075692 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
142075692
NCBI-ProteinID:
XP_074993549
LinkDB
All DBs
Position
Z:complement(67623134..67670305)
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAAASGAKKSKVGATDGARRPGKRSEEKSSVAATGKPKREAEV
DSTEDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSRESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggggacgagctcttcagcgtgtttgaggaggactcggccgccgcc
gcttccggcgccaaaaagagcaaagtgggcgccaccgacggcgccaggagaccgggaaaa
cgatcagaggaaaaatcttcagtagctgcgacagggaagcctaaaagggaagctgaggtc
gatagtactgaagatgccgttttgggaaagaaaccaaaattggaagatgttgtatcagaa
gatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaa
ggttgtacgcatgaggttgcacttccagcagatgaagacttcacgggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcggctcatacatcagctggtaaaact
gtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatgaca
actgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcatgg
gttatttttgatgaaatccactacatgagagattcagaacgtggtgtggtttgggaagag
acaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttat
acggactatcgacccactccactgcagcattatatattcccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggaggaacg
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gtgattattttcagtttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaatt
gattgtctgtcagatgaggacaaaaagcttcctcaggttgagcatgtacttcctcttctg
aagcgaggaattggtatccatcacggtggtctgcttcctatcttaaaagaaaccatagaa
attcttttctctgagggccttataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccaggactgtgctatttacgagtgccagcaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgtcgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcattccacttgacgtacaac
atggtattgaacttgcttcgagtagaagaaattaaccctgaatacatgttagaaaaatcc
ttctatcagttccaacattacagaactattccagaaatagtagaaagagtgaataatttg
gaaggacagtacaacaaaatagcgattcccaatgaagaaaatgtggtcatatactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaaccaaag
tattgcttgccctttctgcagccaggaagactggtaaaggtgaagaacgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattctggt
gaattggacccattatatgtagttgaagtgctactgcactgcagcagagagagtctgaaa
aattctgctactgaggctgcaaagccagccagacctgacgagaaaggagagatgcaggtt
gttcctgttttggtacatcttctctcagctatcagcagtgtccgactttacataccaaaa
gacttgaggcctgttgacaacaggcaaagtgtgttaaaatctatacaagaagtacagaag
cgatttcctgatggagtaccattactagaccctattgatgacatgggcatcaaagatcaa
ggactgaaaaaagtaatccaaaaagtagaggcatttgaacataggatgtattcacatcct
cttcataatgatcccaacttggaaaccgtatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacatcttcagat
gttattgagatgaaaggacgggtcgcttgtgaaatcagcagtgctgatgaactactctta
acagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgcacta
ctaagctgtttcgtatttcaagagaactccagtgaaatgccaaaattgacagagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaa
gcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaatggat
gttgtatatacatgggcaaatggagctaactttgctcatatctgcaaaatgactgatgtc
tttgaaggtagcataattcgctgcatgagaaggctagaagaattgcttcggcagatgtgc
caggctgcaaaagccattggaaacacagagttggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
DBGET
integrated database retrieval system
