Calonectris borealis (Cory's shearwater): 142077016
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Entry
142077016 CDS
T11211
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142077016 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142077016 (XAB2)
03041 Spliceosome [BR:
cbor03041
]
142077016 (XAB2)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
142077016 (XAB2)
Spliceosome [BR:
cbor03041
]
Complex B
Other components
Prp19-related factors
142077016 (XAB2)
Complex C
142077016 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_12
TPR_2
TPR_19
TPR_8
Suf
TPR_15
TPR_7
ARM_TT21_C
ARM_TT21
PPR
TPR_1
TPR_9
TPR_16
Motif
Other DBs
NCBI-GeneID:
142077016
NCBI-ProteinID:
XP_074995300
LinkDB
All DBs
Position
Unknown
AA seq
868 aa
AA seq
DB search
MADATEMPEREEPGPGPGPGPGPGPVLELERPELRFEEEEVQHEEELLRNPFSVRCWLRY
AQARRGGPRPRLNLLFERALRELPGSYKLWYQYLRQRRQQVKGRCPTDPAIEEANACHER
ALVFMHKMPRIWLDYCQFLVEQGRITRTRRTFDRALRALPITQHHRIWPLYLQFVRRYPL
PETAVRVYRRYLKLSPESAEEYVGYLRSVGRLDEAAVRLARLVNDERFVSKEGKSNYQLW
QELCELLSQHPERVRSLDAGAIIRGGLTRFTDQLGRLWGALADCYIRSGHFEKARDVYEE
AVQTVMTVRDFTQVFDSYAQFEESVIAAKMETVAELGREEDEEVELELRLARFERLMGRR
PLLLNSVLLRQNPHNVHEWHKRVQLYQGHPQQIINTYTEAVRTVDPFKATGRPHGLWVAF
ARFYEDNGQLDDARTILTKATRVRFRQVEDLAAVWCEFGEMELRHENYEEALRILRKATA
LPAKRAEYFDSSEPVQNRLYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIV
INYGLFLEEHGYFEESFKAYERGIALFRWPNVADVWHTYLSKFVTRYGGRKLERARDLFE
QALDGCPPKYAKTIYLLYAKLEEEFGLARHAMGVYERATRAVLPAQQHEMFNIYIKRAAE
LYGVTHTRPIYQKAIEVLGDDAARELCLRFADMECKLGEVDRARAIYTYCSQICDPRITG
TFWQTWKDFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAP
GQSGLDDMKLLEQRAEQLAAEAQRDAPRPKEKVLFVRAEGPREALAALSQQGNPEEIDLG
DEDEPEPDEVQLEQKRVPASVFGGLKDD
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcaacggagatgccggagcgggaggagccggggccggggccggggccgggg
ccggggccggggccggtgctggagctggagcggcccgagctgcgcttcgaggaggaggag
gtgcagcacgaggaggagctcctgcgcaaccccttctcggtgcggtgctggctgcgctac
gcccaggcgcgccgggggggcccccgcccccgcctcaacctcctcttcgagcgcgccctg
cgcgagctgcccggcagctacaagctgtggtaccagtacctgcggcagcggcggcagcag
gtgaaggggcgctgccccaccgaccccgccatcgaggaggccaacgcctgccacgagcgc
gccctcgtcttcatgcacaagatgccccgcatctggctggactactgccagttcctggtg
gagcagggccgcatcacgcggacgcgccgcaccttcgaccgggcgctgcgggcgctgccc
atcacccagcaccaccgcatctggcccctctacctccagttcgtgcggcgctaccccctg
cccgagaccgccgtccgcgtctaccgccgctacctgaagctgagccccgagagcgcggag
gagtacgtggggtacctgcgctccgtcgggcgcctggacgaggccgccgtgcgcctggcg
cggctcgttaacgacgagcgcttcgtctccaaggagggcaagtctaattaccagctgtgg
caggagctgtgcgagctgctctcccagcaccccgagcgcgtgcgctcgctggacgcgggc
gccatcatccggggggggctgacgcgcttcaccgaccagctgggccggctctggggcgcc
ctggccgactgctacatccgcagcggccacttcgagaaggcccgggacgtctacgaggag
gcggtgcagacggtgatgacggtgcgggacttcacccaggtcttcgacagctacgcccag
ttcgaggagagcgtcatcgccgccaagatggagacggtggcggagctgggcagggaggag
gacgaggaggtggagctggagctgcgcctggcgcgcttcgagcggctgatggggcggcgc
ccgctgctgctgaacagcgtcctgctgcggcagaacccccacaacgtccacgagtggcac
aagcgggtgcagctctaccagggccacccccagcagatcatcaacacctacacggaggcc
gtccgcaccgtggaccccttcaaggcgacggggcgcccgcacgggctgtgggtggccttc
gcccgcttctacgaggacaacgggcagctggacgacgcccgcaccatcctgaccaaggcc
acccgcgtccgcttccggcaggtggaggacctggccgccgtctggtgcgagttcggggag
atggagctgcgccacgagaactacgaggaggccctgcgcatcctgcggaaagccacggcg
ctgcccgccaagagggccgagtacttcgactcctcggagcccgtccagaaccgcctctac
aagtccctcaaggtctggtccatgctggcggacctggaggagagcctgggcaccttccag
tccaccaaggcggtgtacgaccgcatcctggacctgcgcatcgccaccccccagatcgtc
atcaactacggcctcttcctggaggagcacggctacttcgaggagagcttcaaggcctac
gagcggggcatcgcgctcttccgctggcccaacgtggcggacgtctggcacacctacctc
agcaagttcgtcacccgctacggcgggcgcaagctggagcgggcgcgggacctcttcgag
caggcgctggacgggtgcccccccaaatacgccaagaccatctacctgctgtacgccaag
ctggaggaggagttcgggctggcgcggcacgccatgggggtgtacgagcgcgccacccgc
gccgtcctgcccgcccagcagcacgagatgttcaacatctacatcaagcgggcggccgag
ctctacggcgtcacccacacccgccccatctaccagaaggccatcgaggtgctgggtgac
gacgcggcgcgggagctctgcctgcgcttcgccgacatggagtgcaagctgggggaggtg
gatcgggcccgcgccatctacacctactgctcccagatctgcgacccccgcatcacgggc
accttctggcagacctggaaggactttgagatccgccacggcaacgaggacacgatccgg
gagatgctgcgcatcaagcgcagcgtccaggccacctacaacacccaggtcaacttcatg
gcctcccagatgctcaaggtctacagcaacgccaccggcacggtctcggacctggcgcca
gggcagagcggcctggacgacatgaagctgctggagcagcgggcggagcagctggcggcc
gaggcccagcgcgacgcgccccgccccaaggagaaggtcctcttcgtcagggccgagggc
ccgcgggaggctctggccgctctgtcccagcaggggaaccccgaggagatcgacctgggg
gacgaggacgagcccgagcccgacgaggtgcagctggagcagaagcgggtgcccgcctcc
gtcttcgggggcctcaaggacgactga
DBGET
integrated database retrieval system
