Calonectris borealis (Cory's shearwater): 142080152
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Entry
142080152 CDS
T11211
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142080152 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbor03021
]
142080152 (CPSF3)
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142080152 (CPSF3)
Transcription machinery [BR:
cbor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142080152 (CPSF3)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
142080152 (CPSF3)
U7-dependent histone pre-mRNA processing factors
142080152 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
142080152
NCBI-ProteinID:
XP_075001181
LinkDB
All DBs
Position
3:complement(17532689..17555473)
Genome browser
AA seq
691 aa
AA seq
DB search
MSAKRKGEALIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLYYQLQKL
TGDVEEIEIQQKPALKVFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKI
QKAAVHKISKKVDMDVYRKRTEIMLQDMFGEDCVSSKDGSVLCVTVDGKTANISLDTRTV
DCEPGSEDDESLREMVELAAQRLYDALSPVY
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgaagcggaaaggcgaggccctgatcccggcggaggagagcgatcagctgctc
atccggcccctaggtgctggccaagaagtaggaaggtcatgcattattctggagtttaaa
ggaagaaaaataatgcttgattgcggaatccatcctggactggaaggaatggatgctctt
ccttacattgatttgatagatcctgctgagattgatctcctcctaattagtcatttccat
ttagatcactgtggggctttaccgtggtttttgcagaaaacaagttttaaaggaagaaca
tttatgactcatgccacaaaggctatttacagatggcttctttcagactatgtcaaagtc
agtaatatatcagcggatgacatgctatatacagaaacagaccttgaagaaagcatggac
aagattgagaccatcaacttccatgaagtgaaagaggtggcaggaatcaaattctggtgt
taccacgcaggccatgttctgggagcagccatgtttatgattgaaatagctggtgtgaag
cttttatatacaggtgatttctcaagacaagaagacagacacctgatggcagctgagatt
cccaatattaaacccgatattcttataattgaatccacatacggtactcatattcatgaa
aaaagggaagagcgagaggcaagattctgtaataccgttcatgacattgtaaacagagga
ggtagaggtcttattcctgtgtttgccctgggtcgagctcaagaactacttttaatttta
gatgaatactggcagaatcatcctgaacttcatgatatccctatatattatgcctcctct
ttggcaaaaaaatgtatggcagtttatcagacctatgtcaatgccatgaatgacaaaatc
cgcaagcaaattaacatcaacaatccatttgttttcaagcatattagtaatctgaagagt
atggatcattttgatgatattggcccaagcgttgtgatggcttccccaggtatgatgcag
agtggcttatccagagagttgtttgagagctggtgcacagataagagaaatggagtaatt
atagcagggtactgtgttgaaggaacgcttgctaagcacatcatgtctgaacctgaagag
atcacaactatgtcagggcaaaagctcccactgaagatgtctgtggattacatttctttc
tctgctcacacagattatcaacaaactagtgaatttatccgggccctgaaacctccacat
gtgattttagttcatggcgagcagaatgaaatggccagattgaaagcagcattgatacga
gaatatgaggataatgatgaagttcatatagaagttcataatcctaggaatactgaagct
gtgacattaaacttcagaggagaaaaacttgccaaggtgatgggatctttagcagataag
aaaccagagcaaggacagagaatttctggaatcctagttaaaagaaattttaactatcac
atcctttctccatgtgacctctccaattatacagacttggcaatgagcactgtaacacag
acacaagccattccatatactggcccttttaacctgctttattatcagctacaaaaactt
accggtgatgtagaagaaatagaaatccaacaaaaaccagccttgaaggttttcaaaaat
attactgtgatccaggaaccaggcatggtggtccttgagtgggtggcaaatcctgctaac
gatatgtatgcagacaccgtgacaacagtgatactggaagttcagtcaaatcccaaaata
cagaaagctgcagtacataaaatttcaaaaaaagtagatatggatgtctataggaagaga
acggagatcatgcttcaggatatgtttggtgaagactgtgtgagttcaaaagatggctct
gtcctgtgcgtcacggttgatggaaagactgcaaacatttcactggacactcggacagtt
gactgtgagccaggaagtgaagacgacgaatcccttcgtgaaatggtggaactggctgca
cagaggctttatgatgccctcagccctgtatactga
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