Calonectris borealis (Cory's shearwater): 142080568
Help
Entry
142080568 CDS
T11211
Symbol
SHPRH
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cbor04121
]
142080568 (SHPRH)
Enzymes [BR:
cbor01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142080568 (SHPRH)
Ubiquitin system [BR:
cbor04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142080568 (SHPRH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
PHD
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
PEP-utilisers_N
TPR_12
TPR_10
TRAF3_RING
TPR_2
Motif
Other DBs
NCBI-GeneID:
142080568
NCBI-ProteinID:
XP_075002317
LinkDB
All DBs
Position
3:74990739..75048608
Genome browser
AA seq
1697 aa
AA seq
DB search
MSSRRKRAPPSKIDEEKKKKLCWNMHEDRRNEVITLDDEMTNEDHVSGPSTSSASFIVIN
DDSTDEDLIQKEGSASKSVKFLTVNDEEDSYSILTPVSVQLNIIVLPYRADGSWKALLGE
FALHLPSEQILTDEFHERSFTLMRGDSDDQLQVCVHERSEEEYSNETKEYLGAYEQRILV
EPTLGGEILEGLRWLQKKKIIGLYQRPGEAQALKVGIYLLEAGLSKPEFLSDGGGRPKKA
NQLIQKLMEKFYSFLIPDELEEDEEESDTELERQNIEELYDFVRHTHQQDIQLLREDVQH
PALIPILRPYQSEAVNWMLHRENLASTPTSEDALHFLWREVITLDGVKIYYNPFTGCIIR
EYPIAGPQWPGGILADEMGLGKTVEVLALILTHTRPDVKQDDLTLPEGKLVNFFVPPQPL
EGNKKKKPKEMELKLKEKIQYPSLRVMILAAVKEMNVKKGASIIAIFKYISAIYRYDIQR
NRRLLKRTLEKLITEQVVEQVKGHGLAGSFKLGKNYKERKRRERTKEQIAKTSESIQKKQ
LIDAKTQTKESRNSDVTSENVLKIPVRVDITMEEHDYCTTVKNNRISEADHENSVKEDNV
QQEAVVPKSPDLHGKLLVSSDVSSHPNFGVSKTAARVQQEIPKDESSHSQEHAGSSIQHT
SSVFPFNTSEYRFECICGELGLADYKARVQCLKCYLWQHAECVNYKEENLKIKPFYCPHC
LVAMKPVSTGATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHMLAEQE
VVITTYDVLRTELNYVDIPHSNSKDGRRFRNQKRYMAIPSPLVAVEWWRICLDEAQMVEC
TTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVLFLGVDPYWVKHWWDQLLYRPYCR
KNPRPLYSLIAKIMWRSAKKDVIDQIQIPPQTENVHWLHFSPVERHFYHRQHEVCCQDAL
AKLRKISDWTLKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLT
SLQKKCRTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKEKLKTDSL
QRLHSTHNLMELLLAKHPGIPPTLRDSRLAEEAEQLRQHYMSKSNAEVAEAHQALQPVLQ
TIRELQRKIHSGSPWWLDVIQTAIQYAIDEELVQRVQNEIASNYKQQINKLSMAEKFRDC
RGLQYLLTTQLDEVKKFQKIVREAVKNLEGPPSKQVIEAATICHLRPVRLPLNNCVFCKA
DELFTEYESKLFSHTVKGQTAIFEEMIEDEEGLVDDRLPTTSRGLWATSETERALKAILS
FAKAHRMDVKLTEEGSIFLELFEAWKKEYKLLHEYWMVLRDHVSAIDELAMATERLRVRH
PDEPKPNPPVLHIIEPHEVEQNRVKLLNDKAVAKSQLQKKLGQLLYLTNLEKSQDKTTGG
VNPEPCPICARQLGKQWAVLTCGHCFCNECIAIIIEQYSVGTRRSSIKCAICRQTTSHKE
ISYVFTAETANQEDDIPVKGSHSTKVEAVVRTLKRIQFKDPGAKSLVFSTWQDVLDIISK
ALYDNNMIFSQINGISKFQENLSAFKYDPNINILLLPLHTGSNGLNIIEATHVLLVEPIL
NPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQTMLKTVDRSHTSSSMKQSEASVL
TVADLADLFTEETEELE
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcgtcgaaaacgtgcacctccatcaaaaatagatgaggagaagaagaaaaag
ctctgctggaatatgcatgaagaccggagaaatgaggtgataacattagatgatgagatg
actaatgaggaccacgtttcaggtccaagcacttcttctgcatccttcattgttataaat
gatgatagcactgatgaagatctcattcaaaaagaaggcagtgcctcaaaatctgttaag
tttttgacagttaacgatgaagaagactcttattccattctgactcctgtgtcagtacag
ctaaatattatagtcttgccataccgtgcagatgggtcctggaaagctttgttgggagaa
tttgctcttcatcttccttctgagcaaattctaactgatgaattccatgaaaggagtttt
actttgatgagaggagactctgatgatcagctgcaggtctgtgttcatgaaagaagtgaa
gaagagtacagtaatgagacaaaagaatacctgggtgcttatgaacaacgtattttggtg
gaaccaactttaggtggtgaaatattggaaggcttgagatggttgcaaaagaaaaagata
attgggctttatcaaagacctggagaggctcaagctttaaaggttggaatttaccttctg
gaagctgggctaagtaaaccagagtttctcagtgatggaggtggaagacccaaaaaagct
aatcagctgattcaaaaactcatggaaaagttctatagttttttaattccagatgagctg
gaggaagatgaggaagaatctgacacggaactagagcgacaaaatattgaagagctttac
gactttgtaaggcacacccatcagcaggatatccagttactgagagaggatgtgcagcac
cctgcattaattcctattctgaggccataccaaagtgaggctgtgaactggatgcttcac
cgagagaacctcgcaagtactccaaccagtgaagatgcactgcacttcttgtggcgggag
gtcatcactctggatggagtaaaaatctactataatccgtttactggctgtattatccgt
gaatatccgattgctggaccccagtggcctggaggtattttggcagatgagatgggtctt
ggaaaaacagtagaagtgttggctcttattctgactcatacccgaccagacgttaaacaa
gatgatctgacattacctgagggtaagcttgtgaacttctttgttccacctcaaccttta
gaaggaaataaaaagaaaaaaccaaaggaaatggagcttaaattgaaggaaaaaatacaa
tatcccagcttacgagtgatgatattagcagctgtaaaggaaatgaatgtgaagaaaggg
gcatccattattgcaatatttaagtacatcagtgctatatataggtatgacatacagaga
aatagacgtcttctcaaaagaactctagaaaaactaatcacagaacaagtagtagagcaa
gtcaaaggacatggtctggctgggtctttcaagctaggaaagaattacaaggaacggaag
aggcgagaaagaaccaaagaacagatagcaaagacttcagaaagcattcagaagaagcag
ttgattgatgctaaaactcaaaccaaagaatcaagaaatagtgatgtcacttctgaaaat
gtccttaaaatccctgtacgggtggatatcaccatggaagaacatgattattgtacaact
gtcaaaaataacaggatatctgaagcagatcatgagaactctgtaaaagaggataatgtt
cagcaggaagctgtggtcccaaagtctcctgatttgcatggcaaactccttgtctccagt
gatgtgagcagtcatcccaattttggtgtttctaaaactgcagctcgtgtccagcaggaa
atcccaaaggacgagtcctcacattcccaagagcatgctggcagtagcatacaacacacc
agttctgtatttccatttaatacctctgaatatcgttttgaatgcatctgtggtgagctt
ggattggctgactataaagctcgtgtgcagtgcctgaaatgttacttatggcagcatgca
gaatgtgtaaactacaaagaggaaaacctgaagatcaagcccttctactgtcctcattgc
ctcgtggcaatgaaaccagtttccacaggagcaactctgataatttctccgagttctatt
tgtcatcagtgggtagatgagatcaacaggcatgtaagatcatcttctcttcgagttctg
gtgtaccaaggtgtgaagaagcatggctttttgcagccacacatgttggcagagcaggag
gtggttatcaccacatatgatgtcctccgcactgaactgaactacgtagatataccccac
agtaacagcaaagatgggcgccgtttcaggaaccagaagcggtacatggccatcccaagc
cctttagtagcagtagagtggtggaggatctgccttgatgaagcacaaatggttgaatgc
actactgcaaaggctgccgaaatggcactccgtttaagtggaatcaatcgctggtgtgtc
agtggcactcctgtgcagcgaggattagaagatctatatggattagtcctttttcttgga
gttgatccttactgggtcaaacattggtgggaccaacttttatatcgaccttattgcagg
aaaaatccccggcctctctacagtctaattgccaagataatgtggagatcagcaaagaag
gatgtgattgaccaaattcagatcccccctcagacagaaaatgtacactggcttcacttt
tctcctgtggagagacacttctatcatcgccagcacgaggtgtgctgccaggatgcattg
gcaaaactcaggaagatttcagactggactcttaagcttagtagcctggatagaaggact
gtgacttctattctgtaccctttgctaaggctgaggcaggcctgctgtcatccacaagct
gttcggggagagttcttgccgttacagaaaagcaccatgaccatggaggaactgctaaca
tctctgcagaagaaatgtcgaacagagtgtgaggaagctcaccgacagttggtgtgtgct
cttaatggcttagctggtatccatatcattaaaggagaatatgcattggctgcagagctg
tacagagaagtgttacgatcatctgaagagcacaaagaaaagctcaaaacagattctttg
caaagacttcattctacacacaatttgatggaattgttgttggcaaagcacccaggaatt
cccccgactttgcgtgatagccgacttgcagaagaggcagaacaacttcgacagcattat
atgagtaaatccaatgcagaagttgccgaagcccatcaggccttacagccagttcttcag
accattcgggagctccagagaaagatacattcaggttctccttggtggttggatgtcatt
cagacagcaatacagtatgccatcgatgaggagcttgttcaacgtgtgcaaaatgaaata
gccagcaactacaaacagcagattaataaactctccatggcagagaaattccgtgactgc
agaggccttcaatacctgctgacaacccagctggacgaagtgaagaagttccagaagatt
gtaagagaagcagtgaaaaacttagaaggccctccctctaagcaggttattgaggctgcc
actatctgccatttgcgacctgttagacttccacttaacaactgtgtcttttgtaaggct
gatgagttgttcacagaatacgagtcgaagctcttttctcatactgttaaaggccaaacg
gcaatatttgaggagatgatagaagatgaagaagggcttgttgatgaccgtttgcccacc
acaagtagaggactgtgggcgaccagtgaaactgaacgtgccttgaaagctattctctcc
tttgccaaagctcaccggatggatgttaagctaactgaagaaggcagcatatttctggaa
ctctttgaagcgtggaaaaaggaatataagttacttcatgaatattggatggtactaagg
gatcacgtgtctgctattgatgaactggcaatggctacagaacggctgagagtgcgtcat
cctgatgagccaaaaccaaatccaccagttctccacatcatagaaccgcatgaggtagag
caaaatcgagtgaaacttttgaatgacaaggcggttgccaaatcacaacttcaaaagaaa
ttaggacaacttctgtatctcactaatctggagaaatctcaggataaaactactggggga
gttaacccagagccatgtccgatctgtgcacgtcaactgggaaaacagtgggcagtgctg
acatgtggacattgtttttgtaatgagtgtatagctatcatcatagaacagtacagcgtt
ggcacccgccggagctcaattaaatgtgccatttgcaggcagacaacatctcataaagaa
atatcgtatgtcttcactgcagaaactgcaaatcaggaggatgatattcctgtaaaggga
agtcactccaccaaagtggaagctgtggtccgaacactgaagagaattcaatttaaagat
ccaggggctaaatccttagttttctcaacgtggcaagatgtgttggacataatttcaaaa
gctttgtatgacaacaacatgattttttctcagatcaatggaattagtaaatttcaggaa
aatctctctgcatttaaatacgatcccaacatcaatattttgctgctgcctcttcacact
ggttccaatggactaaacatcattgaagcaactcacgttctgcttgtggaacccattctg
aatcctgcacatgagctacaggctattggcagagtacatcgtattggccaaacaaaatct
accattgttcataggttcctgataaaagcaacaatagaagagagaatgcagactatgctg
aaaactgtagatagaagccacacgagctcttccatgaaacagtcagaagcctcagttctg
acagtggcagatttggctgacctttttacagaggaaacggaagaacttgagtaa
DBGET
integrated database retrieval system
