Calonectris borealis (Cory's shearwater): 142080579
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Entry
142080579 CDS
T11211
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142080579 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142080579 (PNLDC1)
Enzymes [BR:
cbor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
142080579 (PNLDC1)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
142080579 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
142080579
NCBI-ProteinID:
XP_075002355
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All DBs
Position
3:76217655..76230099
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AA seq
532 aa
AA seq
DB search
MEVGAAGFERRLSRLRSRLRRAAFLALDMEFTGLHSTFPQNNEPSLFDSPVERYLKARRS
VQRFTVTQLGLAIFSNENSNKYVVHSYNFFLFPSTLGVTDVEFTLSASSIQFLSHYGFDY
NKFLKDGIPYMNEVQEEILSQHLLAGSWKVSSALDRDVLKKAIDEVTCWIAAAEEEETMV
LRDLSGYQMFEVQLVLRQALQNVWTQPLGHKKVMVKKVSPEHRRLLENSPYDYCQKELIL
LSARGFTNLFQTLVKAKKPLVGHNMLMDLMHLHDKFYRPLPESYEEFKRNIHNLFPVLID
TKTVTKSIWKKCPFPRVSNLLEVYAVLCSSNLNPKDPTCPVIALASDCSRYAEKKSPHEA
GYDAFLCGSVLLKSAHLLLCRSTDDAVEADPSFSQYLTVLAEYLNKVNFIRGGVSSINFS
GEDAPCQHPPLLVVHVRGWPGLNERQIYQEFKALCRFDVRRLSNNQFILLSNKFKHVRRV
LQDYKHHPHLRVSIYRHWRHSPRVNCLLQVSGIVALWSLVAFVLGGAPCCSF
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgggggcggcgggcttcgagcggcgcctctcgcgcctccggagccgcctccgc
cgcgccgccttcctggcccttgatatggagtttactggcttacattcaacgttcccacaa
aataacgagcccagcctgtttgattcccctgtggagcggtacctgaaggccaggcggagc
gttcagcgcttcactgtcactcagcttgggctggcaatattctcaaatgaaaattcaaac
aagtatgtggtgcattcatacaacttttttctctttccctcaacattgggggttacggat
gtcgaattcaccctttctgcatctagcattcagttcctgtctcattatggcttcgactat
aataagttcctcaaagatggaatcccatacatgaatgaggtacaggaggagatccttagc
cagcatctcttagcgggtagctggaaagtcagcagtgccctggacagggatgtgctgaag
aaagctattgatgaagtgacctgttggatagctgcagcagaggaagaggagactatggtt
ctgcgggatctgagtggctatcagatgtttgaagttcagctggttctgagacaagctctc
caaaatgtttggacacagcctcttggacacaagaaggtaatggtgaaaaaagtgagccca
gaacatcgtcggcttctggagaactctccttatgactactgccagaaggagctcattctg
ctgtctgcccggggcttcaccaacctcttccagacacttgttaaagccaagaagcccctg
gtgggacacaacatgcttatggacctcatgcatcttcacgacaagttctacaggcccctt
ccagaaagctatgaggagtttaaaaggaacattcacaacctgtttcctgtcctcatagac
accaagactgtaacaaaatccatctggaagaaatgtccatttcctcgagtatctaatctt
ttggaggtgtatgcagttttgtgcagcagcaacctaaatcccaaagatccaacgtgccca
gtgatagctcttgcaagtgactgctcaagatacgctgagaagaagtctcctcatgaggca
ggctatgatgcgtttctctgtggttcagttcttctgaagtcagctcatttgctactgtgc
agatccacagatgatgcagtggaggctgatccttctttctctcagtatctcaccgtgcta
gccgagtatctgaacaaagtgaatttcatccgaggtggtgtttcaagcattaatttttct
ggggaagatgctccctgccaacatccccctctcttggttgtccatgtccgaggctggcca
gggctgaatgaaaggcagatttaccaagagtttaaagctctttgtcgctttgatgtcaga
cggctttcaaacaaccagttcattctgctctccaataaatttaagcacgtcaggcgtgtt
ctgcaagattataagcatcaccctcatctgcgggtttccatctatcgccactggaggcac
tccccgcgcgtgaactgcctgctgcaagtctctggtattgtggcactgtggtctctcgtg
gcctttgtactcggaggagctccttgctgttcattctaa
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