Calonectris borealis (Cory's shearwater): 142080644
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Entry
142080644 CDS
T11211
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
142080644 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbor03021
]
142080644 (TAF5L)
03036 Chromosome and associated proteins [BR:
cbor03036
]
142080644 (TAF5L)
Transcription machinery [BR:
cbor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
142080644 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
142080644 (TAF5L)
Chromosome and associated proteins [BR:
cbor03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
142080644 (TAF5L)
STAGA complex
142080644 (TAF5L)
TFTC complex
142080644 (TAF5L)
SAGA complex
142080644 (TAF5L)
SLIK complex
142080644 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Ge1_WD40
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
142080644
NCBI-ProteinID:
XP_075002528
LinkDB
All DBs
Position
3:82594849..82616670
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNLKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYAGGSSSRNESNGLEPSDVPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPNSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDILDEEEEEDDSAGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgtacgcacagaacagattcagatggcagtgtcctgctacctcaagcgccgt
cagtatgtggactcggaaggtcctctaaaacaagggctgaggctgtgtcagactgctgaa
gagatggcagctaatctcacagtccaatctgaatctggttgtgccaacgttgtgtctgca
gctccctgcctggcggagccacagcaatatgaagtacaatttggacgattacgcaatttt
ctcacagattcagattctcagcacagccatgaagtgatgcctcttctgtatcccctcttc
gtctacctccatctgaacatggtccagaatggcctaaaaagcacagtggacagtttttac
agccgcttccatggcatgttcttgcagaatgccagccagaaggatatcattgagcagttg
cagactaccatgactattcaagatatcctgtccaacttgaagctccgggcttttctggac
aacaagtatgtcatccgccttcaagaggacagctacaactaccttcttcgctacctccaa
agtgacaacaacaatgccctgtgcaaagtcctgaccttgcacattcacctggatgtgcag
cccgccaagaggactgactaccagctctatgccggtgggagctcctctcgcaatgagagc
aacggcctggaacccagcgacgtgccggcttccattctgcagaacgaggcggcgctggat
ttactgcaggacagcattaaacgtgtcaaggacgggcccccttccttaacgaccatctgt
ttctatgccttctataacacagagcagttgctgaacactgcagagatttcaccaaatagc
aagctgcttgctgctgggttcgataattcgtgtgtgaagctgtggagcctgcgttccagg
aagttaaaatctgagccccacctcgttgatgtgtcccgcatccgcctggcttgtgacatc
ctggatgaggaggaggaagaggacgacagcgcaggcacagaaatgaagatcctgagagga
cactgtggacctgtgtatagcacgaggttcctttcagacagttcggggctcttatcttgt
tctgaggacatgtccatcagatactgggacctcggaagttttacaaacactgtgttgtac
caaggacatgcctatcctgtctgggatttggatattagcccctgcagcctgtactttgcc
agtggttcccacgatcgcactgcaaggctctggtcatttgatcggacgtacccgctgcga
atatacgcaggccatttggcggacgtagactgtgtcaagttccaccccaattccaactac
ttagcgacgggctccacggacaaaactgtgcgcttgtggagcactcagcaaggcaactcg
gtgcgtcttttcaccggacaccgtggccccgtgctagcgcttgcgttttctcccaacggt
aagtacctggcatcagcaggtgaagaccagcggctaaagctgtgggacttggcgtcagga
actctttacaaagaactgagggggcacacagacaacataaccagccttacttttagcccc
gacagcagtttaattgcttcagcgtcgatggacaattcagtccgggtctgggacattcgg
aacacttactgcaacgcccctgcagacgggtcttccagtgaactggttggtgtatatacc
ggacaaatgaataatgtactgagcgtacagtttatggcctgtaatcttcttctagtgact
ggaattgcacaagaaaatcaggaacattaa
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