Calonectris borealis (Cory's shearwater): 142080972
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Entry
142080972 CDS
T11211
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
142080972 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142080972 (MSH6)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
142080972 (MSH6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
142080972
NCBI-ProteinID:
XP_075003422
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All DBs
Position
3:111188809..111203864
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AA seq
1361 aa
AA seq
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MSRQSTLLRFFPKASPAPPRAAAPAPAPPQAGAGTRRRASGERNGREAAAGAASNGAPGR
AAARRKEAAEKGGGDGAAAKAPSVSCEYSPGDLVWAKMEGYPWWPCLIYNHPTERTIVRG
KGKSTRVHVQFFDDSPTRGWVSIKYLRPYKGSSDGETLKGGMFYSTKPEIKRAMVLADDA
MSKDKTKRLELAVCSEPSDTEEEEEEEEMEQMSESASGNSDDCNSEEDVKSNKRVAGRES
AIKAKRRRVLDSDSDHDGSDVEFKPDVKEAASSEEASSGVDENESTDTETDAESVAESPI
KVPSKRKRKEINKPAKRSSLENERSETPKRAATVSLEAKSKLTSFAAPESFESQANTCSG
GIGGFAVWEHEKLDWLQEGKKKDAHRKRQGDPDYDPCTLYVPEDYLNKCTPGMRRWWQLK
SQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKG
YKVARVEQTETPEMMETRYKSMAHPTKFDKVVRREICRIITKGTQTYSVLDCDPSENHNK
YLLCIKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLYEKG
NLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVI
KSLTSESDSLGLTPGENGELALSALGGCVFYLKKCLIDQELLSLANFEEYVPVDIDTAKT
TSSGSFFAKTDQRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLC
APLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKLPDLERLLSKIHSIGSPLKSQNHPD
SRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDVMEEVASDFKSKVLKQLVTRKAKNPD
GRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKAVEEDLHKYLDKQR
KLLGFKSMLYWGAGKNRYQMEIPESAISRNLPEEYELKSTRKGYKRYWTKEIEKMLAAMV
NAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLDVLMSLANYSQDGDGPLCRPVI
LLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNNIVIGSKDEDSSSEASCVLVTGPNMGG
KSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSS
ILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAEKIKCRTLFSTHYHSLVEDYSHN
AAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLANIPEEVIQKGHRK
AKEFEKATISLRIFRYLCLVVDGAAGDANAVQKLTTMIDHL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccagagcaccctgctccgcttcttccccaaggcctccccggcaccgcctcgg
gcggcggcacccgcccccgcccctccgcaggccggcgcggggacccgccgccgcgcttcg
ggggagcggaatggccgcgaggccgccgccggcgcggcgagcaacggcgcaccgggcaga
gctgcggcccggcgcaaggaggcggcggagaagggcggaggggacggcgcggccgccaag
gcccccagtgtctcctgtgagtattcgcctggtgacttggtctgggccaagatggaaggt
tatccttggtggccgtgtctcatatacaaccatccgactgaaagaacaatagtcagagga
aaagggaaatccactcgtgtccatgtacagttttttgatgacagccctacgaggggctgg
gtcagtattaaatacctgaggccatataaaggttcatcagatggggagacgctgaaggga
ggtatgttttatagtacaaagcctgaaattaaaagagcaatggtgctagcggacgatgca
atgagtaaagataaaactaagcggcttgaactggcagtatgcagtgaaccttcagacaca
gaggaggaggaggaagaggaggaaatggagcagatgagtgaaagtgcatcaggcaacagt
gatgactgcaatagtgaggaggatgtgaagagtaataagcgagtagcgggcagggaaagt
gccataaaagccaaaagaagaagagtgttggattctgacagtgatcatgatggctctgac
gtagagttcaagcctgatgtgaaagaagcggccagcagcgaggaagctagtagtggggtg
gatgaaaatgaatctactgacacagagacagatgcagagagtgttgcagaaagtcccata
aaagtcccttctaaacgaaagagaaaagagataaacaagcctgctaaaaggagtagctta
gaaaatgaacgttctgaaacgcccaaaagagcagcaacagtttctttagaagccaagtct
aagctgacatcatttgctgcacctgaaagttttgaatctcaagcaaatacttgcagtgga
ggcatcggtggcttcgcagtatgggaacatgaaaagcttgattggctgcaggaagggaaa
aagaaagatgcgcacaggaaacggcagggtgaccccgattatgacccatgtactctgtat
gtacctgaggactatctcaacaagtgtacaccaggaatgcggaggtggtggcagctgaaa
agtcaaaactttgatgctgtgattttctacaaagttggaaaattctatgagctgtatcat
atggatgcagtcactggcgtaaatgagttgggcctgatctttatgaaaggtacttgggcc
cattccggttttccagaaactgcgtttggccgattctctgatgttctagtgcagaaaggc
tacaaggtagcccgtgttgagcaaacagaaactcctgaaatgatggaaacgcgctacaag
tcaatggcccacccaacaaaatttgacaaggttgtacgccgagaaatatgcagaatcatc
accaaaggaactcagacttacagcgttctggactgtgatccctctgagaaccataataaa
taccttctgtgcattaaggaaaaagaagactcctctggacaacgtgtttatggggtctgc
tttgttgacacgtcggtggggaagttttatgtaggccagttctcagatgaccggcactgt
tcgaggtttaggactttagtagcgcattacactcctgtgcaggtactgtatgagaagggg
aacctgtctgtggacacacagaagatactgaagggctcactagtttcttgcattcaggaa
gggctgatctctggttctcagttctggaatgcatctaaaacactaaaagtccttcttgaa
gaaggctatttcaaggagaaacagaactctgaaaatggatgttctctgccgtctgtaatc
aaatctctgacttcagagagtgactcgctgggattaactcctggtgaaaacggtgaatta
gctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctgattgatcaggag
ctgttatcgctggcaaactttgaggagtatgtccctgtggatattgatactgcaaaaact
acgagttcaggtagtttctttgccaaaactgaccagcggatggtgctggatggtgtcacc
ctgatgaacttggaagtcctgcagaacggaaccaatgggaccacagaaggtactttgttg
gaaaggattgattcctgttgtacgccatttgggaagcgactcctgaaacagtggctctgc
gctccactttgtaatcctaaatccatcaacgatcgtttagatgctgttgaggaccttctg
gcagtgccagataaaatgtctgaagttagtgagcacctgaagaaactccctgaccttgaa
aggctgctcagcaaaatccacagtattggatcgccacttaaaagtcagaaccatcctgac
agcagagccatcttttatgaagaaatcaaatacagcaaaaaaaaaattgctgactttttg
tctgcactggaggggtttaaggtaatgaatgaaattgtcgatgtcatggaagaagttgcc
agtgacttcaaatccaaagtccttaagcagctagtcacgcgcaaagccaaaaatccagac
ggccgcttcccagacttgagtgcagagcttaaaagatgggatactgcttttgatcataac
caggctcgaaagacaggagtgattactccgaaggcgggttttgaccccgattatgataaa
gcactacaggatattaaagctgttgaggaagatcttcacaagtacctggataagcaacgc
aaactgcttggattcaaatccatgctgtactggggggcaggcaaaaaccgataccaaatg
gaaataccggaaagtgcaatatcacgtaatttgcctgaggaatacgagttgaagtcaacc
aggaagggatataaacgttactggaccaaggagatcgagaagatgctggccgccatggtt
aatgctgaagagcgcagagatgcagcactaaaagactgtatgcggcgtttgttttacaac
ttcgacaaaaatagcaaagactggcagacagctgtggaatgcattgctgtgttagatgtc
ttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacctgtaatt
ctactgcctgtggatagtgctcctcccttcctggaacttaaaaattcacgccatccatgc
attacaaaaactttctttggggatgattttattcctaataacatcgtgataggcagcaaa
gatgaagatagcagtagtgaagcctcctgtgtgttagtaactggcccaaatatgggtggc
aaatctacgctcatgagacaggctggtctcctggttataatggctcaactgggatgctat
gtacctgctgaagtttgcaggcttacaccgattgacagagtatttacgagacttggcgcc
tcagacagaattatgtcaggtgaaagtaccttcttcgttgaattgagcgagacttccagc
attctccagcatgcaacagagcattcccttgttcttgtggatgaactgggcagaggcaca
gctacttttgatggaacagctatcgcgagtgcagttgtgaaagaacttgcagagaaaatc
aagtgtcggactctgttctccacacactaccactcgctggtggaggattattcgcacaac
gcggctgtgcggcttggtcacatggcatgtatggttgaaaacgagagtgaagatccaagc
caggaaacgattacgttcctgtataagttcattgaaggagcgtgtccaaagagctatggc
ttcaatgcagcaagactcgctaatattccagaggaagttattcagaaggggcacagaaaa
gcgaaagaatttgaaaaagctaccatttcactgagaatatttaggtatctctgcctggtg
gtggatggtgctgcgggtgatgcaaatgctgttcagaaacttaccaccatgatcgatcac
ctttaa
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