Calonectris borealis (Cory's shearwater): 142081174
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Entry
142081174 CDS
T11211
Symbol
CNTN1
Name
(RefSeq) contactin-1
KO
K06759
contactin 1
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
142081174 (CNTN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cbor04515
]
142081174 (CNTN1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cbor00537
]
142081174 (CNTN1)
Cell adhesion molecules [BR:
cbor04515
]
Immunoglobulin superfamily
Contactins
142081174 (CNTN1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cbor00537
]
Others
142081174 (CNTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
fn3
Ig_2
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Interfer-bind
Tissue_fac
DUF4998
Fn3-I_PB4
NDNF
Big_3_4
Motif
Other DBs
NCBI-GeneID:
142081174
NCBI-ProteinID:
XP_075003914
LinkDB
All DBs
Position
1:32516788..32785083
Genome browser
AA seq
1023 aa
AA seq
DB search
MLVLQGTIPFEIIAEQKITMWLFIYHLITPCFIFCLAEEGNKGYGPVFEEQPIDTIYPEE
SSDGQVSMNCRARAIPFPTYRWKLNNWDIDLTKDRYSMVGGRLVINNPEKSRDAGKYVCV
VSNIFGTVRSSEATLSFGYLDPFPPEERYEVKVREGVGAVLLCEPPYHYPDDLSYRWLLN
EFPVFIALDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPQSDR
AKVYPADIKVKFKDTYALLGQNVTLECFALGNPVPELRWSKYLEPMPATAEISMSGAVLK
IFNIQYEDEGLYECEAENYKGKDKHQARVYVQASPEWVEHINDTEKDIGSDLYWPCVATG
KPIPTIRWLKNGASFRKGELRMQSLSFDDAGMYQCIAENTHGIIYANAELKIVASPPTFE
LNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTELLVNGSRIRIWDDGSLEIINITK
LDEGRYTCFAENNRGKANSTGVLEMTEATRITLAPLNVDVTVGENATMQCIASHDPTLDL
TFIWSLNGFVIDFEKEHEHYERNVMIKSNGELLIKNVQLRHAGRYMCTAQTIVDNSSASA
DLVVRGPPGPPGGIRVEEIRDTAVSLTWSRGTDNHSPISKYTIQSKTFLSEEWKDAKTEP
SDIEGNMESATVIDLIPWMEYEFRIIATNTLGTGEPSMPSQRIRTEGAPPNVAPSDVGGG
GGSNRELTITWMPLSREYHYGNNFGYIVAFKPFGEKEWRRVTVTNPEIGRYVHKDESMPP
STQYQVKVKAFNNKGDGPFSLTAVIYSAQDAPTEIPTDVSVKVLSSSEMSVSWHHVSDKS
VEGYQIRYWAAHDKEAAAQRVQVSNQEYSTKLENLKPNTRYHVDVSAFNSAGYGPPSRTI
DIITRKAPPSQRPRIISSIRSGSRYIITWDHVKAMSNESAVEGYKVLYRPDGQHEGKLFS
TGRHTIEVPVPSDGEYVVEVRAHSEGGDGEVAQIKISGAAAGVPTLLLVLVVPTLGVLAC
SGF
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgttgcaaggcacgattccttttgaaataattgctgaacagaagataaccatg
tggctcttcatctatcatcttattacaccctgtttcatcttctgcctggcagaggaagga
aacaaaggttatggacccgtttttgaggagcaacccattgacactatctacccagaagaa
tcttcagatggacaagtttcaatgaactgcagggctcgagcaattccttttcctacttac
aggtggaaactcaacaactgggatattgatttaacaaaggatcgctacagtatggtggga
ggcagacttgttatcaataatccagagaagtcaagggatgctggaaaatatgtctgtgta
gtgtcgaatatctttggaactgtcagaagcagtgaagccactctgagttttggatatctg
gatccctttccacctgaggaacgctacgaggttaaagtgcgagaaggtgttggagcagtg
cttctttgtgagcccccttaccactacccagatgatctcagttatcgctggcttctaaat
gagttcccggtattcattgctttggacaaacgacgatttgtgtcacagacaaacggcaac
ctctacattgcaaatgtagaagcatcagataagggcaattattcgtgttttgtgtccagc
ccttcaataacaaagagtgtattcagtaaatttattccacttattccacagtccgatcgt
gcaaaagtatatcctgctgatatcaaggtgaagttcaaggacacatatgctctcctgggg
caaaatgtgacgctggagtgttttgctcttgggaatccggttcctgaactccgatggagt
aaataccttgaacccatgccagccactgctgagataagcatgtctggtgcagttcttaag
atcttcaatattcagtatgaagatgaaggactttatgagtgtgaagctgaaaactataaa
ggaaaagataaacatcaagcaagagtttatgtacaagcctctcctgagtgggtagaacat
atcaatgacacagagaaggatataggcagtgacctatactggccttgtgtagctacaggc
aagcctattccaacaattagatggttgaagaatggtgcctcgttccggaaaggtgaacta
agaatgcaaagtctgagctttgacgatgccggcatgtaccaatgtatagcagaaaacacg
catggaattatttatgcaaatgctgaactgaagattgtggcttcacctcctacttttgaa
ctgaaccctatgaagaagaaaatcctagcagctaaagggggccgtgtaatcattgaatgc
aagcctaaagctgctcctaagccaaaattctcgtggagcaaaggaacagaattgcttgta
aatgggagccgtatacgtatctgggatgacgggagcctggaaattatcaatatcacaaag
ctggatgaaggtcgctacacctgttttgcagaaaataaccgaggaaaagctaatagcact
ggtgttctagaaatgacagaagctacaaggattactttagctccgttgaatgttgatgtc
accgttggagagaatgctaccatgcaatgcattgcatcccatgatcccacattagacctg
acatttatttggtctctaaatggctttgtaatagattttgagaaagagcacgaacattat
gaaaggaatgttatgattaaatccaacggtgagctgctcattaaaaatgttcagctgcgg
cacgctgggaggtacatgtgcactgctcagacgattgttgacaactcctcggcttcggct
gaccttgtggtaagaggtcctccaggccctcccggaggtataagagtagaagaaattaga
gatactgctgtatcacttacctggagtcgtggaacagacaatcatagccctatttctaaa
tacactatccaatcaaaaacctttctatctgaagagtggaaagatgccaaaacagaacca
tcagatattgaaggaaatatggaatctgctacagtgattgatttaattccatggatggaa
tatgagttccggataatagcaacaaacactttggggacaggagaacctagtatgccatca
cagagaattagaactgaaggcgctcctcctaatgtggctccttctgatgttggaggaggc
gggggaagcaatcgagagctgacaataacatggatgcctttatcaagagaataccactat
ggcaataactttggttacatagtggctttcaagccatttggtgagaaagaatggagaaga
gttacagttactaatcctgaaattggccggtatgtccacaaggatgaatcaatgccacct
tcaacccagtatcaagtaaaagtgaaagcttttaacaacaaaggggatggaccattcagt
ctcactgctgttatttattcagcacaagatgctccaactgaaatacctacagatgtgagt
gtaaaagttttgtcatcttctgaaatgtctgtttcttggcaccatgtttctgataaatct
gtggaaggatatcagattcgttactgggctgctcatgataaagaagcagctgcacagcgg
gtacaagtaagcaatcaagaatattcaaccaaactggaaaacctgaagcctaatactcgc
taccatgtagatgtttctgccttcaatagtgcaggctatggacctcccagtagaaccatc
gatattattaccaggaaagcacctccaagccaacgtccaagaattatcagttctataaga
tctggttcaaggtacatcatcacctgggatcatgtgaaggcaatgtcaaatgagtctgca
gttgaaggatataaagtactgtatagaccagatggacaacatgaaggcaagttgttttca
actggaaggcacacaatagaggtcccagtgcccagcgatggtgaatacgttgttgaggtc
cgagcacacagtgaaggaggagatggagaagtagctcaaataaaaatttcaggtgccgct
gctggagtaccgactctgctcctggtcctggtggtgcctaccctgggtgtcctcgcctgc
tcgggattctga
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