Calonectris borealis (Cory's shearwater): 142081203
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Entry
142081203 CDS
T11211
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03008
Ribosome biogenesis in eukaryotes
cbor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
142081203 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
142081203 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbor03021
]
142081203 (XRN2)
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142081203 (XRN2)
03009 Ribosome biogenesis [BR:
cbor03009
]
142081203 (XRN2)
03016 Transfer RNA biogenesis [BR:
cbor03016
]
142081203 (XRN2)
Transcription machinery [BR:
cbor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142081203 (XRN2)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
142081203 (XRN2)
Ribosome biogenesis [BR:
cbor03009
]
Eukaryotic type
Pre-60S particles
RNases
142081203 (XRN2)
Transfer RNA biogenesis [BR:
cbor03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
142081203 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
142081203
NCBI-ProteinID:
XP_075003984
LinkDB
All DBs
Position
3:complement(128220557..128272006)
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKAPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQMGHEVKDCQGLPREKQGKHDQFADSLPVAEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRMKRDQPSFIPGGQFSPQALGNRSSPQAISNPRQAAFEMRMHDRQNSTTSSSPNTSL
TSDGSPSLAGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGIQG
KLTLNENAVLPDQTVESPVPMLRDLAQNSAVSISFKDPQFDEDFVFKAIVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHMMPRERGMPGMYANAVPLG
TYGSPYTRPLLSGQQQIPKLLSNLRPQESWRGPTPLFQQAPQRTAGAAPLLAWNRMLQSQ
NQYQTSQYQGLGGPMSYPQRPEDRMDRGRQAYGPGRPYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcgtggaggagaaggctaaagagtgcaatggcgtcaaggctccaattgatacaagcaaa
cctaaccctaatgaggtggagtttgataacctgtatttggatatgaatggtataattcac
ccttgtacccatccagaagacaagccagcacccaaaaatgaagatgaaatgatggttgcg
atttttgagtatattgacaggattttcaacattgtaagaccaaggcgacttctttacatg
gctatagacggagtagctccacgtgcgaaaatgaatcaacagcggtcaagaagattcaga
gcatcaaaggagggcatggaagctgctgaagagaagcaaaaaataagacaagaaattctg
gcaaaaggtggcattcttcctccagaagaagtgaaagagagatttgacagcaactgtatt
accccgggaactgagtttatggacaatcttgctaaatgtctccgctattacattgctgac
cgtttgaacagtgacccagggtggaaaaatttgacagttattttgtctgatgctagtgct
cctggtgaaggtgaacataaaatcatggattacattagaagacaaagagctcaaccaaac
catgacccaaacactcatcattgtctgtgtggggctgatgctgatctgattatgcttggg
ttagccacacatgaaccaaacttcactataattagggaagagtttaaaccaaataaaccc
aagccttgtggtctttgtaaccagatgggtcatgaggttaaggattgccaaggtttgccc
agagaaaaacaaggcaagcacgatcagtttgcagacagtcttcctgtcgctgaacaagaa
tttatcttcatccggttatgtgttttgcgagagtatttggaaagagaactcactatggcc
agtttgcctttcacttttgattttgaaagaagtgttgatgactgggtctttatgtgcttc
tttgtgggaaatgactttcttcctcatctgccatctttggagatcagggagggagcaatt
gatcgcttggttaacatctataaaaatgtggtgcacaaaactggggggtatctcacagaa
agtggttttgtcaacttacagcgagtccagatgatcatgttagctgttggagaagttgaa
gatagtattttcaaaaagagaaaagatgacgatgataactttaaaagacggcaaaaagaa
aaaagaaaaagaatgaagagggatcagccttcttttattcctggtggacagttttcccct
caagctctgggaaatcgatctagtcctcaggcaatcagtaaccctagacaagccgccttt
gagatgagaatgcatgacagacagaattctacaacttcatcatcgccaaataccagcctc
acttctgatggcagcccatccctggcaggaggaattaagcgaaaagctgaagatagtgac
agtgaacctgagccagaggataatatcaggttatgggaaactggctggaaacagcgctac
tataaaaacaaatttgatgttgatgcatctgatgagaaattccgtcgtaaagttgtacag
tcctatgtggaagggctttgctgggttctcagatattattaccagggctgtgcatcctgg
aactggtattacccttttcactatgctccgtttgcttctgactttgagggtattgcagac
atgccttcagattttgagaaaggctcaaaaccgtttaagcctcttgaacaacttatggga
gtatttccagctgcaagtggaaattttctgccaccaacatggaggaagctcatgacagat
ccggaatcaagcataattgacttctaccctgaagattttgctattgatttaaatgggaag
aaatacgcttggcaaggtgttgcattattgccatttgttgatgagcgacgccttagagct
gccctggaagaagtctaccctgacctgactcctgaagaaagcagaagaaatagcctgggt
ggtgatgttctctttgttggaaagcaccatccactttgtgactttattgtagaacagtac
aagaccaaaaatacagagccagtggatatacccccggagctgtgccatggaatccaggga
aagcttacactgaatgaaaatgctgttcttccagatcagacagtggagtctcctgttcca
atgctgcgtgatcttgcacaaaattctgcagtcagtatctctttcaaagatccacaattt
gatgaagactttgttttcaaggctatagtgttacctggtgcaaagaaacctgctccagtt
ctgaagccaggagactgggaaaaaaccaacaatgatggcaggccttggagaccacaactt
ggttttaatcgagacagaaaaccagtccatttggaccagtcagcgtttagaactttaggc
catatgatgccaagggaaagagggatgccaggaatgtatgccaatgcagtacctcttgga
acttatgggagcccatacaccagaccgcttctgagtgggcagcagcagattcctaaattg
ttgtcaaatcttagaccccaggagtcctggcgaggtcctacacccttgtttcaacaggca
ccacaaagaaccgctggggctgctcctctccttgcctggaaccgcatgctgcaatcccaa
aatcagtaccagacgagtcagtaccaggggctgggcggaccaatgagttacccacagaga
cctgaagatcggatggacaggggaagacaggcatatggccctgggaggccctacccgcta
ccacctccctcaggaagatacagctggaattag
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