Calonectris borealis (Cory's shearwater): 142081697
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Entry
142081697 CDS
T11211
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
cbor Calonectris borealis (Cory's shearwater)
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142081697 (HTT)
04131 Membrane trafficking [BR:
cbor04131
]
142081697 (HTT)
03029 Mitochondrial biogenesis [BR:
cbor03029
]
142081697 (HTT)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
142081697 (HTT)
Membrane trafficking [BR:
cbor04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
142081697 (HTT)
Mitochondrial biogenesis [BR:
cbor03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
142081697 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
142081697
NCBI-ProteinID:
XP_075004730
LinkDB
All DBs
Position
4:10762953..10859570
Genome browser
AA seq
3118 aa
AA seq
DB search
MATMEKLMKAFESLRSFQQQQGPAAIPEEPLQRPKKELSTTKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRMQYFYAWLLNV
LLGLLVPVEDDHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKEAEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTASGGIAQVSVSKDESASR
NRSGSIVELIAGGGSSCSPVLARKHKGKILLGEEEGLEDDSETRSDVSAASFAASMKGEI
TSELASSSGVSTAGSVGSSAADSTGHDIITEQPRSQHTLQSDSVDLTSCDLTSTATEGEE
DDVLSRSSSQISAVQSDPTMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAANILQDDSSESFRNSSIALQQPHLLKTTSHSRQPSDSSVDR
FTSKEDAADPGDHENKPSRVKGDIGHYTDGNSAPLVHCVRLLSASFLLTGEKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGQEYEEQYVSDILNYIDHGDPQIR
GATAILCGTIVNSILNKSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVNFLEG
KTESLHRGVHHYTGLLKLQERVLNNVVICLLGDEDPRVRHIAAASLTRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDVTMENNLSRV
IAAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSPSDEAQKGCTIG
MAGMVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDSNQGAAKQEEP
WPALADRTLVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG
KERESVEQTSVPMSPKKGGETSPAARQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNSNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TIATVCVQQLLKTLFGTNLASQYDGLSSNPNKAQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSITSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRRGENNLSAPE
DHTEVKQAKYLPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI
HIFKSDEYRISKSESKIQLLCRVFSMQGMFRRITAAATRLFTGDGSDGSFYTLESLSDLV
QSMIPTHPSLVLLWCQILLLVNYTNYNWWSEVHQTPKRHSLSTTKLLSPQISGDSDESNS
ESKRGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISA
VHRNSAASGLFIQAIQSRCENLAAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFR
VLARMVDTLACRRVEMLLAATLQNSITQLPVEELDRIQEYLQNSGLATRHQRLYSLLDRF
RLMVAPDTTSPSPLVTSHPLDGEDQPALENVILDKDWYVSLVRSQCCIKSDSALLEGAEL
VNRIPQPDLNSFMTSKEFNLSLLAPCLSLGMNEISRDQKSSFFETARRVTLDHVSTTVQN
LPANHQVFQPLLPTEPSAYWKKLSDIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVP
PDKEDDILKFVVMSVEALSWHLMHDQIPLSVDLQAALDCCCLTLQQPSLWNLLASAANVT
YACSLINCIRFIIEAVAVEPGNQLLSPERKKNASKGLSEGEVDSNTQKTKHITAACEMVA
EMVECLQTVLALGHKRNSSIPAFLTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKP
AGDFGTVFPEIPVEFLQEKEIFKEFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQ
EENQQEEDTERTQINVLAVQAITSLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFG
RKLSVIRGIVEQEIQAMVSKRDNIATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTE
REIGDMDYKLGQVSIHSIWLGNNITPLREEEWGEDEEDESDIPAPSSPPTSPINTRKHRA
GVDIHSCSQFLLELYSQWILPSNPSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTL
TELRKVHPSEDEILVQYLIPATCKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALH
GILYILECDLLDETAKQLIPIISEYLLSNLRGVAHCVNIHNQQHILVMCAAAFYLIENYP
LDVGPEFSAGIIQMCGAMVSGSDESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSV
DRVNVQSPHRAMAALGLMLTCMYTGKEKISPSRTTDANPAAPDSESVIVAMERVSVLFDR
IRKGFPFEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLH
STGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSE
QVDVNIFCLVAIDFYRHQIDEELDRRAFQSVFEVVASPGTPYHRLLTCLQNVHKITAC
NT seq
9357 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgaaggctttcgagtcgttgcgctccttccagcagcag
cagggcccggctgccatccccgaggagccgctccagagaccaaagaaagaactttcaact
accaagaaagatcgagtgaatcattgcctaacaatatgtgaaaacatagttgcccagtct
ttaagaaattctccagaatttcagaaactgctgggaattgctatggaactctttctcctc
tgcagtgaggatgcagaatctgatgtccggatggttgctgatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcctaggttacaattagaactgtataaagagatt
aaaaagaatggtgcttccagaagtctacgtgctgcactctggagatttgctgagcttgcc
catctagttcggcctcaaaaatgcaggccatatttagtgaaccttttgccctgtctaaca
cgaataagtaagagacctgaagaatcagtacaagagacgctagctgcggcaataccaaaa
atcatggcagcgtttggcaattttgcaaacgacaatgagattaaggttttattgaaggct
ttcatagcaaatcttaaatccagttcccctactatccgtcgaacagcggcaggatcagca
gtaagcatctgtcaacattcgcgaagaatgcagtacttttatgcctggttattgaatgta
cttttaggcttgttggttcctgtagaagatgatcatcctactcttttaattctgggtgtt
ttactaacactaaggtatctcatacctttattgcaacaacaagtaaaggataccagcctg
aaaggcagttttggcgtaacaagaaaagaagcagagatttcaccttcaccagaacaactt
atacaggtttatgaattaactctgcattacacccagcatcaggaccataatgttgtgact
ggagccttagaactattacagcaactctttagaacgccaccacctgaacttctccacgcc
ctgaccgcttcagggggcattgcgcaggtcagtgtatccaaagatgaatctgccagcagg
aaccgcagtgggagcatagtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcgagaaagcataaaggtaaaatacttcttggtgaagaagaaggtttggaggatgat
tctgaaacccgatcagatgtcagcgctgcatcgtttgcagcttctatgaagggcgagata
accagtgaactagcttcttcatcaggtgtatcgacagctgggtcagtagggagttcagct
gctgattctaccggacatgatatcattactgagcagccacgttctcaacatacattgcag
tcagactctgtagacctgacgagctgtgatttgacaagtacagctactgaaggggaagaa
gatgatgtgcttagtcgaagctccagccagatcagtgctgtccagtcagatcccactatg
gacttgaatgatggtacacaggcttcctcgccaattagtgatagctctcagactactaca
gaaggtccagactctgctgtaacaccttcggacagttctgaaattgttttggagggtgct
gaaggacagtattctggaatgcaaattgggcagctgcaggatgaggaagatgaggctgca
aatattctccaagatgattcatcagagtctttcagaaattcttctattgctcttcaacag
cctcacctgttgaaaaccacaagccatagtaggcaaccttctgatagcagtgtagataga
tttacatcaaaagaagatgcagcagatcctggtgatcatgaaaataagccctccagggta
aagggagacataggtcactataccgatggaaattctgctcctttagtgcactgcgttaga
cttctgtcagcctcttttctacttactggggagaaaggagctttagttcctgatagagat
gtgagagtcagtgtaaaagccctggcagtaagttgtgttggagcagctgttgcgcttcac
cccgagtctttcttcagcaaactgtataaaacaccccttgaagcaatgggacaagagtat
gaggagcagtatgtatcagatattctgaactacattgaccatggagatccccagattaga
ggagctactgccattctgtgtggaacaattgtcaactccattctaaataaatcccgcttt
gatgtggaaaaatggctaataaatgtcagaagctcaacaggaaatctcttttccttgata
gactgcatacctctgttacagaaaacgctgaaagatgagtcctctgttacctgcaaactg
gcttgtacagctgtgaggcattgcatcatgagcttatgtagtagcagttacagtgaacta
ggtttacaattaattgttgacctccttacgctgaagaatagctcatattggctagtaagg
acggaacttcttgaaacacttgcagaggtagattttcggctagtcaacttcttggaaggg
aaaactgagagcttgcacagaggagttcatcattatactggtctactaaaacttcaggag
agagtgcttaataatgttgtaatatgtctacttggagatgaagatccaagagtgagacat
atagctgcagcttcattaacgaggcttgttccaaagctattttataactgtgatcaagga
caggctgatccagttgtggcagtagcaagagaccaaagcagtgtctacctgaaactacta
atgcatgaaacacagcctccatctcactttgcggtgagcactatcaccagaacatataga
ggttacaatatgctgcaaagtccgacagatgtcactatggaaaacaatctctcaagggtt
attgcagcaatttcccatgcattgacaatatccactacgagagcacttacgtttggctgc
tgtgaagctttgtgtcttctctccacaacatttccagtctgcacctggagcgtgggatgg
cactgtggtgtttcccagccaagtccttcagatgaagctcagaagggctgcaccattgga
atggccggcatggtcctgtctctcctttcatcagcatggttcccactggacctctctgca
catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgctta
aagaatccctggagtgctgaagaagattcaaaccaaggtgctgcaaagcaggaggaaccc
tggccggctctggcagatcgaactcttgttactttagtagaacagctcttttctcatctg
ctgaaggtcattaatatttgtgcacatgtcatggatgatgttgctcctggcccagcagta
aaggcagcgttaccttctctcacaaacccaccttctcttagtccaattcggaggaagggg
aaggagagggagtctgtcgaacagacatctgtgccaatgagccctaaaaagggtggtgaa
acgagtccagctgctaggcaaaccgatgctactgggcctgttccaacaagtaaatcgtct
tcagtaggaagcttttatcatcttccatcatatctgaagttatacgatgtcttgaaagca
acccatgctaattataaggttactttggatctccagaacagtaatgaaaagttcggatgt
ttcttacggtctgccttagatgttctgtctcaaatcttggaacttgctactcttcaagac
attggaaagtgtgtagaagaaattttgggatacctgaaatcatgtttcaacagagaacca
acaattgcaacagtttgtgtacagcagttgttgaaaacattgtttgggacaaatctggct
tctcagtatgatggcttgtcttcaaaccccaacaaagctcaaggcaaagctcaacgctta
ggttcttccaatttgagacctggtctctatcattattgcttcatggcaccatacacgcat
tttacacaggcccttgctgatgctagtctaaggaatatggttcaggctgagcaggaacac
gatgcttcaggatggtttgatgtgctgcaaaaagtttctacacagctgaaaactagcatt
accagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatatactacaacaacatccgtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctacgagttaactactgtcttctg
gattcggatcaggtgtttattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggaatctgaagccattattcctaatatcttttttttcctggtgttgctgtct
tatgagcggtatcactccaaacagataattggaattcctaagatcattcagctgtgtgat
ggtatcatggccagtgggaggaaagctgttacacatgcaataccagctctgcaacccatc
gttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagagttggaa
acacaaaaggaggtggtagtgtcaatgctgctgagactgattcagtaccaccaggtgcta
gaaatgttcatcttagtattgcaacagtgtcataaagaaaatgaagacaaatggaaaaga
ttgtcccggcaaatagctgacattattctcccaatgcttgcaaaacaacagatgcatata
gactctcatgatgctctgggagtattgaacactttgtttgaaattttggctccttcatcc
cttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaacaatggcatca
gtgagcactgtccagctatggatttctggaattttagctatccttagagttctgatttca
cagtcaacagaagacatcgttctatctcgtatacaagagctttccttctcaccatatttg
atttcatgtcaagcaattaacagactgagacgtggagaaaataacttatccgcaccagag
gatcacactgaggttaaacaggctaaatatctgcctgaagagacattttctaggttctta
ttacaactggttggcattctactggaagatattgttaccaaacaattgaaagtggacatg
aatgagcagcaacatactttctactgccaggagctgggcactctgcttatgtgcttaata
catatcttcaaatcagatgaatacagaatcagcaagtcagaaagcaaaattcagcttttg
tgccgagtgttcagtatgcaggggatgtttagaagaatcacagctgcagccaccagactt
tttacaggagatggatctgatggtagtttctatacccttgaaagtttaagtgaccttgtt
cagtccatgattcccacgcatccttctttagttctcctctggtgtcaaatcctgcttctt
gtcaattataccaactacaactggtggtcagaagtgcatcaaaccccaaagagacacagt
ctttctacgactaaattgcttagccctcagatatctggagatagcgatgaatcgaattca
gaatctaaacgtggcatgtgcaatcgagagatagtgagaagaggagcactcattcttttt
tgtgactatgtttgtcaaaacctacatgattcagaacacttgacctggcttattgtgaat
catgttcaagacttgattaatctgtcccatgagcctccagtacaagactttattagtgct
gtccacaggaattcagcagccagtggtctcttcatccaggccattcaatcacggtgtgaa
aatcttgcagctcccacaactctgaagaagactttacagtgcttagaggggatacatctc
agccagtctggggctgtcttaacattatatgttgataagcttctgtgtactccattccgt
gtgcttgctcgcatggttgacacactggcttgccgtcgggtagaaatgcttttggctgca
actttacagaacagcattactcagttaccagttgaagaactggatagaattcaggaatac
cttcagaacagtggattagcaacaagacaccaaagactttactcgctcttggataggttt
cgtcttatggtagcaccagacacaactagtccttcacctctggttacctcacacccacta
gatggagaagaccaaccagctttagagaatgtaatactagacaaagactggtatgtgtca
ctagtgaggtcacagtgttgcatcaagtctgactcagcactgctagaaggtgcagagctg
gtaaataggattcctcagcctgacctgaactccttcatgaccagcaaggaattcaaccta
agcttgttagcaccttgtttaagccttggcatgaatgaaatctcaagagaccagaagagt
agcttctttgaaacagctcggagggtaactctggatcatgtgtctaccactgtacaaaac
cttcctgccaaccaccaggtttttcaaccactattgccaactgagccatcagcctactgg
aaaaaactaagcgatatatttggagatgaggtgatgtatcagtctatgatgacactttgt
cgtgcactggctcagtatttgttgttactctcaaaactaccagctggtctccgtgttcct
cctgacaaagaggatgatatcctgaaattcgtagttatgtcagtagaggcactatcatgg
catttaatgcatgaccagattccattaagtgtagatcttcaagctgctctggattgttgt
tgtctgacattacagcagcctagtctctggaatttgctggcttctgcagctaatgtgaca
tatgcttgctccttaattaattgcattagatttatcatagaagcagttgctgttgaaccc
ggtaatcaactacttagtcctgaaagaaagaagaatgcttcaaaaggcttaagtgagggt
gaagttgattcaaacacacagaaaactaaacacattactgcagcttgtgaaatggtagct
gagatggtggaatgcttacagactgtcttggcactggggcacaaaagaaacagcagtatc
ccagcgtttcttactcctgtcctcaagaacatcatcatcagtttagcaaggctgccttta
gtgaacagttacacaagagtacctcccttggtctggaaattaggctggtcaccaaagcct
gcaggtgactttggcacagtttttcctgaaataccagtagaatttcttcaagaaaaagaa
atctttaaggagttcatctatcgcattaatacacttggatggatcagccgtactcagttt
gaagagacttgggctactttgcttggtgtgcttgtaactcagcctattgtaatggaccaa
gaggagaaccaacaagaggaggatacagagaggacccaaattaatgttcttgcagtacaa
gccataacttccttggtgctgagtgcaatgacaatacctgttgcaggcaatccagcagtt
agctgtttggaacagcagccccgcaacaaagctttaaaagctctggacacaaggtttggg
aggaagctaagtgttatcaggggaattgttgaacaggaaatccaagcaatggtatctaag
agagataatattgctactcatcacttataccaagcttgggaccctgttccatcactttct
cctgctactacaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaa
cgagaaataggagatatggattataaactgggacaggtctctatacactccatatggtta
ggaaataatatcactccattgagagaagaagagtggggtgaggatgaagaagatgagagt
gacatacctgctccttcctcaccaccaacctctcctattaacaccaggaaacaccgggct
ggtgtagatatacattcttgttctcagttcttgcttgaactgtatagtcaatggatattg
ccatcaaaccctagcaagagaacgccagtcattttgattagcgaagtggtgcgatcactt
ctggcagtatcagacttatttacagaaaggaatcagtttgagatgatgtatacaacattg
acagaactgcgaaaggtgcatccatcagaagatgagattcttgtacagtatttgatacca
gccacttgtaaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagt
cgactgctggaatcaaccctaagaagcacccatatgccaagtcggattggagctctgcac
ggaattctttatatccttgagtgtgacttgcttgatgagacagcgaagcaactcattcca
attatcagcgagtatctgctctccaatttgagaggagtagcacattgtgtgaatatccat
aaccaacagcacatcttggtaatgtgtgcagctgctttctatttgattgagaattaccca
cttgatgtagggcccgaattctctgcaggaattatacagatgtgtggagccatggtatct
ggaagtgacgaatcaacaccatccattatttatcattgtgtcctgagaggattagaacga
ctcctcctttcagagcaactttctaggctggatagtgaatcgctagttaaactgagtgtt
gacagagtgaacgtgcagagcccccacagagcaatggcagcacttggattaatgctgact
tgcatgtacacaggaaaggaaaaaatcagccccagtcgtaccacagatgcaaatcctgct
gctcccgacagtgaatctgtgatcgtagctatggaacgagtatctgtcctttttgatagg
atcaggaagggatttccttttgaagctagagtagtggctcggatccttccacagttcctt
gatgattttttccccccacaagatgtaatgaataaagttattggagaatttttatccaat
cagcagccttacccgcaattcatggcaacagtagtttataaggtgttccagacactacat
agcactggacagtcctcaatggtccgtgactgggtgatgctgtctctttctaatttcaca
caaagaacacctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttcc
accagtcaatggatttcagcaattcttccacatattatcagcagaatgggaaaatctgag
caagtggatgttaacatcttctgtttggtggccatagacttttaccgacatcagatagat
gaagaattagatcggagggcctttcagtcagtgtttgaggtggtagcatctccaggaacc
ccatatcatcgcctactaacttgtttgcaaaatgtccacaagatcacagcatgttga
DBGET
integrated database retrieval system
