Calonectris borealis (Cory's shearwater): 142082020
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Entry
142082020 CDS
T11211
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03015
mRNA surveillance pathway
cbor03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142082020 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
142082020 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142082020 (CPSF6)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
142082020 (CPSF6)
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GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
142082020
NCBI-ProteinID:
XP_075005636
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Position
1:39997922..40042735
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AA seq
583 aa
AA seq
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MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPPSNRGRGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPANSGIPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGR
HTKNNTQNSGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRR
HKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatcgacatctacgccgatgtgggcgaggaattcaaccag
gaagctgaatatggtggacatgatcagattgatttgtatgatgatgtaatttctccatct
gcaaataatggagatgccccagaagatcgtgattacatggattctctcccaccatctgtt
ggggatgatgtaggtaaaggagctgcaccaaatgttgtctatacgtatactggaaagaga
attgccttgtacattggaaatcttacgtggtggacaacagatgaagacttaactgaagca
gttcattcactgggggtaaatgatattttggagataaaattttttgaaaatcgtgctaat
ggccagtctaaagggtttgcccttgtgggtgtgggatcggaagcatcctccaaaaagctc
atggatttgttgcctaaaagagaattgcatgggcagaatcctgttgtaactccatgtaat
aaacaatttctgagtcagtttgaaatgcagtcaaggaaaactacacagtctggccagatg
tctggggaaggtaaagctggtcccccaggaggaagctcacgagcagcatttccacctagt
aatagaggacgaggccgttttccaggtgccattccaggtggagacagattccctggaccg
gcaggaccaggagggccaccaccacctttcccagctggacaaactcccccacgtccacct
ttaggtcctcctggcccaccaggcccaccaggccctccacctcctggtcaggtcctccca
cctccattagctggacctcctaatcgtggtgaccgtccaccaccaccagttctgtttcca
ggacagccttttggtcagcctccacttgggccacttcctccaggccctccaccaccagtt
ccaggctacgggccaccaccaggtccgccaccacctcagcagggtccacctccacctccg
ggtccatttccccctcgtccgcctggccctcttgggccgcccctgactcttgctcctcct
ccacatctccctgggccacctccaggtgctccaccacctgcaccacatgtgaatccagct
ttcttccccccacctgccaatagtggcatacctacttcagacagccgtggcccacctccg
acagatccatatggccgacctccaccatatgacagaggtgactatgggccacctggaagg
cgtttcactggaaataacatgtccataagagaaaaattacatattccattctatgggagg
cacacgaaaaataatactcaaaactcagggagagaaatggatgctgcaaggacacctcta
agtgaagcagaatttgaagaaatcatgaatagaaatagggcgatctcaagcagtgccatt
tcgagagctgtatcagatgccagtgctggggactatggaagtgctatagagaccttggta
actgcaatttccttgattaaacagtccaaagtatctgcggatgatcgctgtaaagtactt
attagctctcttcaggactgccttcatggaattgagtccaagtcttatggttctggatcc
agaagacgtgagcgatccagagagagggaccacagtaggtcacgagaaaaaagtaggcgc
cacaaatcacgtagtagagatcgtcatgatgactattatcgggaaagaagccgtgaaaga
gagaggcatcgtgatcgcgacagagatcgcgacagagaacgagatagagagagagaatat
cgtcatcgttaa
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