Calonectris borealis (Cory's shearwater): 142082226
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Entry
142082226 CDS
T11211
Symbol
DCHS2
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-23
KO
K16507
protocadherin-16/23
Organism
cbor Calonectris borealis (Cory's shearwater)
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cbor04515
]
142082226 (DCHS2)
Cell adhesion molecules [BR:
cbor04515
]
Cadherins
Cadherin related
142082226 (DCHS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
142082226
NCBI-ProteinID:
XP_075006307
LinkDB
All DBs
Position
4:49184852..49301879
Genome browser
AA seq
3336 aa
AA seq
DB search
MARRLRGGRCRGGRGGGPPTGRALALLVPLWLWAAGGGAAAVYNLSLAVDEGLPAETLVG
DIRAGLPAGAGPPGGFLLSEGSGESAVLADFHVQPETGIIRTARRLDRERRARYSFAAAT
LRGEVVQVEIAVTDVNDHPPRFPRDCLQLNVSELSPPGTAFRLPAARDPDAGRFGTQGYA
LLEEGGAAGEPPLFQLRYGPPEPLELVLLRRLDRERAEAHRLVVEAWDGGSPRRRGRLRV
SVRVLDENDNAPAFSRGEYRARLREDAPPGTAVCRLRATDPDLGANGEVRYAINRRQSDP
DGYFAVEERSGVLRLRRPLDREARALHRLVVEARDGGAQPEVSSALVSVAVLDVNDNRPA
IRLLYLTESGGPRVSEGARPGDYVARVSVSDADEGGGAEGGGGIALALLGGDGAFALRPA
GAGVFFLCVAGPLDRESRDLYELRLVATDGGAPPLSAEEPLLLRVADLNDEAPAFPQPHY
RAAVSEAASPGTAVLRLSASDADEPGSPNAEVRYALEGEPAALALLRIDARSGAVSTRAR
LDRERQAALELRVVARDGGRPPRAAACRLSVRVEDANDNEPRFERQVYRGRLPEHAAPGR
CLLQVKATDADADHFGEIEYFLYDGFHYYEKSKAFQIDPRTGQICVAQDIDREGDPTTYD
LLVKATDGGGLSAQAFVRIEIEDINDNQPVFEQAVYVTSISSHTQPGTEIINVVATDRDS
GIYGVVTYELVPGEFSSFFTVDTSTGIIYLISALGQLARSALFLTVSARDGGGLPSATNA
AVTVNILQTAAAPAIFERSRYTFSVPEDASEGSPIGTVKAREPPNSLEVVSYRISSGDPH
GRFSIDPQFGIIRSKKQLDYETQSVVVLTVQSQLGNSPVYSSTQVNISVIDINDNPPVFL
TKSDKVTISHTQPPGTAVYIAHAEDKDSGLNGAIKYSIASKQSNAFSIDPSLGVVNLTRT
VFADKQQEYTLHIAAEDCGSPPLTSLLMLTVIIEEQKMGPTLVFQNLVYQVEISEATSPG
ARILQVQAHSLDPRSVTSKLTYSLEPSTDSVAFGISSDTGWIYLRKHLNYECAQILSFRA
LVSTSEDENLRQNASTSVIVNVLDENDNSPMFMRESYFFEMEENPIPRGVVGTITAVDKD
SGRNGQLSYFLLSDGKYFKMNSNTGSILXFVICLILLLESSLPXGNGSKVXSFQELLPFL
LHFLCPSGEIINWVALDREKHAHHQLTVLVTDHGSPRLNATAAVYIAVRDLNDNEPLFPQ
AAPGQELRLQVLEGQPSGTLITTVFAKDFDSGSNGVVLYAIESEEDMGYFQIDVLSGELR
TTRSLSHAERSDYRMMVTARDQGMPSLQGHVAVYIRVIPLPNGRSVFSQDFKHFVIPENF
KPAQVLNSLKWPDNHLTTNRKLHFSIAKDDDDVHFEIDSLTGDLFLSKELDYETASHFLL
QVIIKDYNNNPPQNNTVFLSIDIEDQNDHSPYFQDDFIVIGIEENAPVGTLVYTFNAKDG
DGSFLNSKIEYSLEISNMGENPFLIHPSYGTLTTAFPLDREITRSVILTVSAADQAINLT
DRRVDSLAAKIVILDINDNSPSFMSSPLSYVMEDVEVGFLVHHIIAKDPDEGRNGQVTYH
ILSGNENKAFVLDKITGLLTTAQLLDREIQEHYSLTVMALDDGSPALSATQVLTIIVLDV
NDETPIFLKQFYETAVRENQDPGEFVIMVEAVDRDTGLNSLLRYEILPGTDYEKFKMNSD
SGELVTTASLDRETQEVFSIKVLVRDSGTPSLSSTVTVICTVLDENDHSPMFLFPASEIH
IPENQQPSVVYITWAVDMDAGNNGALRYKIIGGNVGEYFTLNNTSGKLLVTRSLDREDVS
NFTLVIECHDLGSPLRSSTAQLYLTVLDENDHNPLFAKTQYQISVREDLEEGSAILDLFA
SDEDDGLNGEVTYSLIDDTFGVFAIDSVTGSIVTTKALDRETKSQYTFRAVASDCSTHLP
RSTTVSVVVHVDDVNDNDPVFLQNPIRAFVPAETCVNETVATVRAEDVDLGSNGAVVFSL
MIAETVFQIDAKTGDIILQEPLASNEFSTQLLVMASDQGIPPRTATAMVIIFTEEQEEEI
SFSRSLYEASVPENSAAGTSLLTVEAYERKFRGENIKYSIFSDKESIFSIHPITGAITVK
EPKFLDYEVKNKIHLSVLAENGLNSAICGVTVLIQDVNDNVPKFQQSYYKASVWEGQSPK
TDIIQVFATDLDSGLNGETEYSILSGNENATFLIDSARGILATNTVLDHETTSSFRLVVQ
AADKGNPRLSATSIVRIQVLDVNDNAPIVLPLDEVEVAENALPGFIVTQVPASDADSRPA
LQFGFIYNSPGMKFAINQHTGVVTVVEPLDFEETAVYKLSIIVSDSIHQTEAELTILVLD
INDNPPVFTQDLYQVSLPELISVDATVLTVSAVDRDSEHNGMISYKILSSSEGFAIDHKN
GSVFATGPVTQLEKIPIIQLLIEATDSGSPALSAVTSVEVHVEDVNNYAPQFTQMLYNLS
MSEDASVGESVLTFSAIDYDWTQENTYVEYSIIDGNSDNLFSVETSVVESETSYKLVGNL
VLSDTLDRETASSHCLVLLASDRGTPSLNSTAMVLITVLDINDNPPVFSSPEYHIHVKES
IPVGSHITEVSASDCDAGTNAEVTYAMISGNDRGHFRLDGKTGSVDLMKTLDYEDTMKFT
LIIQATDGGADVKNVAFSVVLISVLDDNDYAPLFLFPSLSCIVSENLPAFSFVCAVNALD
FDKGSYGHLTYSIQSSCLAHREAPRDHDMFFIDPLTGDIHTKQMFDYESQNRYCLIIQAK
DKGDSLATLTVQVDIEGKDEFDPVFTQDQYFFNLPEKNEAGQLLGRVTASDSDGGLDGVV
HYSLLKTSPFFSVNQTSGSIYLTRTVHRKKNGSKRNDDTLELLVRAHSPKIESKFTVCTV
LVNVSNSPESYPIVSAYSLTISVSVSLIAFLLLAVSLIALILRHRRKDLMNSCVKKEAVS
SSATDVNSASEDKDCQKIQSTESSMLPMGAIAEWLSLAGIEEGKDDGVPCRHSDSSGHGS
AEGETAEDEEIKRINEHPCRKSSGSALNERGSRVPDSGIPRESDQLSCQSGETDVVATTQ
SMESVQATKGGGGEEACHGAYAHNKMLSQTLKKIGIKEKDMMTDLTREFVLMSERQDSGY
DSLATLGTSGEDLGGGYNWDYVLSWEPRFQPLASVFNDIAKLKDENVHIHSFPKEKKSLV
FPPPLITSVAQPGIRTVPPRMPNIISGQAFKKYPRSPLIHNLGYPPPTMTPSFSPSLSLL
TMQTPTASPVMSDGRMIGTCLIDPSHELATEEEIQV
NT seq
10011 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggcggctgcggggcggcaggtgccggggcgggcgaggcggcggtcccccgacg
gggcgggcgctggcgctgctggtgccgctgtggctgtgggcggcgggcggcggcgcggcg
gcggtgtataacctcagcctggcggtggacgagggcctgccggctgagacgctggtgggg
gacatccgcgcggggctgccggcgggcgcggggccaccggggggcttcctgctgtcggag
gggagcggcgagtcggcggtgctggcggacttccacgtccagccggagacgggcatcatc
cgcacggcgcggcggctggaccgggagcggcgggcgcgctacagcttcgcggcggccacg
ctgcgcggcgaggtggtgcaggtggagatcgcggtcaccgacgtgaacgaccacccgccg
cgcttcccgcgggactgcctgcagctgaacgtctccgagctcagcccgcccggcaccgcc
ttccgcctcccggccgcccgcgaccccgacgctggccgcttcggcacgcagggctacgcg
ctgctggaggagggcggcgcggcgggggagccgccgctcttccagctgcgctacgggccg
ccggagccgctggagctggtgctgctgcggcggctggaccgcgagcgggcggaggcgcac
cggctggtggtggaggcgtgggacggcggcagcccgcggcgccgcgggcgcctgcgggtg
tcggtgcgggtgctggacgagaacgacaacgcgcccgccttcagccgcggcgagtaccgg
gcgcggctgcgggaggacgcgccgccgggcaccgccgtctgccgcctgcgggccaccgac
cccgacctgggcgccaatggcgaggtgcgctacgccatcaaccgccggcagagcgacccc
gacggctacttcgcggtggaggagcgcagcggcgtgctgcgcctccgccgcccgctggac
cgcgaggcgcgggccctgcaccgcctggtcgtggaggcgcgggacggcggcgcccagccc
gaggtctccagcgccctcgtctccgtggccgtgctggacgtgaacgacaaccgccccgcc
atccgcctgctctacctcaccgagagcggcggcccgcgggtctccgagggcgcgcggccc
ggcgactacgtggcccgcgtctccgtctcggacgccgacgagggcggcggggcggagggc
ggcggcggcatcgcgctggccctgctgggcggcgacggcgctttcgccctgcggccggcc
ggcgccggcgtcttcttcctctgcgtggctgggccgctggaccgcgagagccgcgacctc
tacgagctgcggctggtggccacggatggcggcgcgccgccgctctccgccgaggagccg
ctgctgctgcgcgtcgccgacctcaacgatgaggcgcccgccttcccgcagccccactac
cgcgccgccgtctccgaggccgcctcccccggcaccgccgtcctccgcctcagcgcctcc
gacgccgacgagccgggctcgcccaacgccgaggtgcggtacgcgctggagggcgagccg
gccgccctggccctgctgcgcatcgacgcgcggagcggcgccgtcagcacgcgcgcccgc
ctggaccgggagcggcaggcggcgctggagctgcgcgtggtggcgcgggacggcgggcgc
ccgccgcgcgccgccgcctgccgcctcagcgtccgcgtggaggacgccaacgacaacgag
ccccgcttcgagcggcaggtctaccgcggccgcctgcccgagcacgccgcgcccggccgc
tgcctcctgcaggtcaaggcaacagatgcagatgccgaccactttggtgaaattgagtat
tttctttatgatggatttcattattatgaaaaatccaaagccttccagattgacccacgt
actggtcagatctgtgttgctcaagacatagacagagaaggagatccaaccacttatgat
ctcttagtaaaagctacggatgggggtgggctgagtgcccaagcttttgttcgcatcgag
atagaagatattaatgataatcaacctgtttttgaacaagccgtctatgtgacgagcatc
agcagtcacacacagccaggaacagagatcatcaatgttgttgccacagacagagattcg
ggaatatatggcgttgtcacatacgaactggtcccgggagaattttcttcttttttcacc
gtggatacatccacaggaattatttacctgatctcagctcttggccagctggcacgttct
gcactcttcctgactgtttctgcacgggatgggggtggccttccctctgccaccaatgca
gctgtaacagtaaacatccttcagactgctgcggcccctgccatatttgagagatcccgg
tatactttttctgttcccgaagatgcatctgaaggcagcccgattggcaccgtaaaggcc
agagaacctccaaattctttagaagtggtttcttacagaatttcctccggtgatccacat
ggaagattctctattgacccccagtttggtatcatccgctccaaaaaacagcttgattat
gaaactcagtctgttgtggtgctcaccgttcagtcgcagttgggtaactcccctgtttac
agtagcacccaggtcaacatatctgtgatagatattaatgacaaccctccggtatttctt
accaaatctgataaggtaactatttcacatacccagcctcctggcactgctgtctacatt
gctcatgcagaagacaaagacagtggcctaaatggggcgatcaaatatagtatcgcaagc
aagcagtcaaatgcatttagcattgacccaagccttggagtggtgaacctcaccaggaca
gtatttgcggataagcagcaggaatatactctacacatagcagctgaagactgtggaagt
cctcctctgacttctttgctgatgttgacagtgattattgaagagcagaagatgggccct
actttggtttttcaaaacttggtgtatcaagtagaaatcagtgaagctacctctccaggt
gcccgaatccttcaggttcaagcccactcacttgatccacgtagtgttacctccaagctg
acgtattccttagagcctagcacagattctgttgcatttggaatcagctctgatactggc
tggatttatcttcggaaacatttgaactacgaatgtgcacagatactaagttttagagcc
ctggtcagcacctccgaggatgaaaacctcaggcaaaatgcaagtacatcggtaatagtt
aatgtcctggatgaaaatgataattctcccatgtttatgcgtgaaagctacttctttgaa
atggaggaaaatccaattcccaggggtgtggttggcaccattacagctgttgacaaagac
tcgggaagaaatggacaactttcctatttcctcttgtctgatggaaagtatttcaagatg
aattccaacacaggtagcattttatgatttgtaatctgcctaatattgcttttggaaagc
agccttccctaagggaatggaagtaaagtgtaaagctttcaggaactgcttccctttctc
cttcactttctttgtccatcaggtgaaatcataaactgggttgcactggaccgtgaaaaa
catgctcaccaccagctgaccgtgctagtgactgatcacgggtcgccgcggcttaacgcc
acagcagctgtgtacatcgcggtgagggacctcaacgacaacgagcccctcttccctcag
gcggcgcccgggcaggagctgcgcctccaggttttggaagggcagccatcagggacactt
attaccactgtctttgcaaaagactttgattctggaagcaacggtgttgtattatatgca
atagaatcagaagaggatatgggatacttccagattgatgttctcagtggggaattaaga
acaacccggtctctgtcacatgctgagagatcagactacagaatgatggtcacagccagg
gaccaggggatgccttcacttcaaggacatgttgctgtttacatccgggtaatcccactt
cccaacgggagatctgtcttctctcaagatttcaagcacttcgtcatacctgagaatttt
aaacctgcacaagtgttgaattctctgaagtggcctgataatcatctaacaactaacaga
aaactgcatttcagtatcgctaaagatgatgatgatgttcattttgaaatagatagcttg
acaggagacctttttctttccaaggaacttgactatgaaacagcttcacactttcttttg
caagttattataaaggattataacaataatcctccacagaataacactgtcttcctaagt
atcgacatagaagatcagaatgatcattctccatattttcaggatgacttcatagtgatt
ggcatagaggaaaatgcacctgttggcactctggtttacacattcaatgcaaaagatgga
gatggcagttttctgaacagcaaaatagagtattccctagaaataagtaacatgggtgaa
aatccatttcttattcacccttcgtatggcaccttgaccacagcttttccactagacagg
gagattacgcgctctgtgatccttacagtgtctgcggcagaccaggcaataaatctgact
gatcgtagggttgattccctggctgcgaaaattgttattttagatatcaatgacaacagt
cccagttttatgtcttcgcctctttcctatgtcatggaggatgtggaggtgggcttcctt
gtgcaccacataattgcaaaggatcctgatgagggaagaaatggacaagttacatatcac
attctttcaggcaatgagaacaaagcatttgtattggataaaatcacaggactcttaact
acagcccagcttctggaccgtgagattcaggagcactacagtttgacagtcatggctctt
gatgacggcagcccagctctctctgccacgcaggttctaaccatcattgttcttgatgtg
aatgatgagaccccgatatttctgaagcagttttacgagactgcagttcgtgaaaaccaa
gatccgggggagtttgtcataatggtggaagctgtggacagggatacaggactgaattca
ttgcttcggtatgaaatcttaccgggaactgattatgagaaattcaagatgaactcggac
agtggagaactcgtaacaactgcatcactggacagggaaacccaggaggttttcagtatt
aaagttttggttcgagatagtggaaccccgtctctgtcgagcacagtgacagttatctgc
acagtgctggatgaaaacgatcactctcccatgtttctttttcctgcctctgagatccat
attccagagaaccaacagccttctgtcgtttacattacctgggctgtagatatggatgct
ggcaacaacggagctctaagatacaaaataattggtggaaatgttggagaatacttcaca
ctgaataacacttcaggaaaactgctggtcactcgtagcttagacagagaagatgtcagc
aatttcactcttgtaattgagtgccatgatctaggcagtcccttgagaagttccactgca
cagctctatctaacagtcttggatgaaaatgaccacaacccgttgtttgcaaagacccag
tatcaaatctccgtgagagaagacctagaggaaggctcagctatcctggacctctttgct
tctgatgaagatgatggcctgaatggcgaagttacatactccctcattgacgacaccttc
ggcgtgtttgctattgacagtgtaacggggtctatagttactacaaaggcactggaccgg
gagaccaaatcccagtatacatttagggccgtggcaagtgactgtagcacccatttgcca
agaagcaccactgtcagtgttgtggtgcacgtcgatgatgtcaatgacaatgatcctgtc
tttttgcagaatcctatcagggcctttgtgcctgccgaaacctgtgtgaacgagacagta
gccactgtaagagcagaagacgtggatctgggatcaaacggagctgttgtttttagtttg
atgatagcggaaactgtatttcagattgacgcaaagacaggtgacatcattcttcaggag
cccttggcttccaatgagttcagtacccagctgctagtgatggcttcagatcaaggtatc
ccacctcgaacagccacagctatggtcattatctttacagaagaacaagaggaggagatt
tcattcagccgtagcctgtatgaagcaagcgtgcctgagaacagtgcagcaggtacatca
cttctaactgtagaagcttatgaacgcaaatttagaggagaaaacataaaatacagcatc
ttcagtgacaaggaaagcatattctccatacaccccattacaggtgcaatcacagtaaaa
gagccaaagtttcttgattatgaagttaagaataaaatacatctttcggttttggctgaa
aatggtttgaattcagcgatctgtggagtgacggttttgatacaagatgtgaatgataat
gtacctaaatttcagcaaagctattacaaagcatcagtatgggaaggccaaagtcctaaa
acagacatcatacaggtatttgcaactgaccttgacagtgggttgaatggagaaactgaa
tactcaattttatctggtaatgaaaatgcaacatttctaattgattcagcacgagggatt
ttagcaactaatacagtcctagatcatgaaaccacttcatctttcagattggttgtacaa
gctgctgataaaggaaaccccagactttctgctacaagtattgtgaggatacaagtgtta
gatgttaatgacaacgctccaattgtcctaccactagatgaagtggaggtcgcagaaaat
gccctgcctggttttatagtgactcaggtgccagcaagtgatgcggactccaggccagca
cttcagtttggttttatttataatagtcctggaatgaaatttgccatcaatcaacacact
ggtgtagtcacagtggtggaaccattagattttgaagaaactgctgtgtataagctgagc
atcatagtttcagattctatacatcaaacagaagcagaactcaccatccttgttttggac
atcaatgataacccaccagtgtttactcaggatttgtatcaggtgagcttgccagagctc
atttctgtggatgccactgttctgacagtctctgctgtggatagggattcagagcataat
ggaatgatttcctacaaaatcctctcttcctctgagggatttgccattgatcataagaat
ggttcggtgtttgctacaggaccagtgacacagctggaaaagattcccattatccagctc
ctgatagaagccacggacagtggcagtcccgctctgagtgcagttacctctgtagaggtg
cacgtagaagatgtaaataactatgcccctcagttcacgcagatgctgtacaatctcagc
atgagcgaggatgcctcggttggagaaagtgtccttacgttttcagccatcgactatgat
tggacacaggaaaacacatatgttgaatactctattattgatgggaattctgacaattta
ttctctgtggaaacaagtgtcgtggagtcagaaacatcttacaagcttgttggcaatctt
gttttgagcgatactctcgacagggaaacggcttcttctcactgtttggtcctccttgcc
tctgatcgtggaacaccctccttgaattcaactgctatggtgctaataactgtactggat
attaatgataatcctccagtattcagcagcccggagtaccatattcatgtcaaagaaagc
atccctgtaggtagtcacatcactgaagtttcagcaagtgactgcgatgcaggcactaac
gcagaggtcacttatgccatgatctctggaaatgacaggggacattttcgcttggatggg
aaaacgggatcagtggatttgatgaaaacgctggattatgaggataccatgaaattcact
ttaatcatccaagccacagatggaggagctgatgtaaaaaatgtggctttttctgttgtt
cttattagcgtcctagatgacaacgattatgccccactgtttttgtttcccagcctgagc
tgcattgtcagtgaaaatctgcctgccttttcttttgtgtgtgctgttaatgcgctggat
tttgataaaggctcctatggccaccttacctactccatccagtcttcgtgtttggctcat
cgtgaagctcctagagaccatgacatgttcttcattgatcctttgacaggagatattcat
acaaagcaaatgtttgactacgaaagtcagaataggtactgtctcataatccaagcaaaa
gacaaaggtgactcactggccactcttacagttcaggtagatattgaggggaaagatgaa
tttgacccagtgtttacacaagatcaatatttctttaatctccctgagaagaatgaagca
ggccagttgcttggcagagtgacagcatcagacagcgatggtggactggacggagttgtt
cattactccctgctaaaaacttctccgttcttttctgtgaatcaaaccagtggtagtatt
tatttgactcggactgttcacagaaagaaaaatggcagcaaaaggaacgatgacaccctg
gaattgctggtaagagctcatagccccaaaattgagtcaaagttcacagtatgcaccgtt
ttggtaaatgtttccaattctcctgagagttaccccatagtgtcagcatacagcctgacc
attagcgtttcggtctccttgatagcgttcctactgcttgcggtcagtcttattgcactt
attctgagacataggcggaaagatctgatgaactcttgtgtgaaaaaagaagcagtatcc
tcctcagctactgatgtgaattcagccagcgaagataaggactgccagaaaatccaaagt
actgagagcagtatgcttcccatgggtgccattgcagaatggctgagcttagcaggaatc
gaagaggggaaggatgatggtgtcccctgcaggcattcagactccagtggccacggttct
gctgaaggagaaactgcagaggacgaggaaatcaaaaggatcaatgagcatccttgcaga
aagagctctggctcagcactgaatgagcgcggctcacgggtgccagattcagggatccca
agagagtctgatcagctctcctgtcagtctggagaaacggatgtcgtggctaccacacaa
agcatggagagcgtgcaggccactaaaggaggaggcggagaagaagcctgtcatggagcc
tatgcacataacaaaatgttatctcaaacgcttaagaaaattggaataaaagagaaagac
atgatgacagacctcacaagagagtttgtcttgatgtcagaaaggcaggactctgggtat
gattcacttgcaactcttggcacctctggtgaggatctcggaggtggttataactgggat
tacgtgctcagctgggaacccagatttcaacctcttgcctcagtgtttaatgatattgcg
aaactgaaagatgaaaacgtacacattcatagcttccctaaggagaagaaatctcttgtt
ttccctcctcccttgataacatcagtagctcagcctggcataaggacagtgccaccacga
atgccaaatataatatcagggcaagcatttaaaaaataccctcgttctccccttatccat
aatcttggataccctccaccaaccatgacccccagtttttctccttctctctctttactt
accatgcagacacctactgcttctccagtaatgtctgatgggagaatgataggaacatgt
cttattgatccaagccatgaacttgcaacagaggaagaaattcaggtctag
DBGET
integrated database retrieval system
