Calonectris borealis (Cory's shearwater): 142082258
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Entry
142082258 CDS
T11211
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2
KO
K24066
synaptopodin-2
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
142082258 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cbor04990
]
142082258 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
cbor04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
142082258 (SYNPO2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Calsarcin
PDZ_2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
142082258
NCBI-ProteinID:
XP_075006367
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All DBs
Position
4:complement(79733596..79829509)
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AA seq
1274 aa
AA seq
DB search
MLPNCTRKMGTGDYLCIAMSGGAPWGFRLQGGKEQKQPLQIAKVRSKSKAAKAGLCEGDE
VVSINGKPCGDLTYAEVIVLMESLTDVLQMLIKRSSNGINETLSAERENGKQDNIKNEDY
RESTTLQINTAKETPHGGLCITEIYSETHQGAGESNIHFSETKQETTQSHRITPKVIGTS
KVLMTDEAAFRGKTEERRPGTMVELQLSLSNDAHKGTNAPAVTLLGAEKCTPSGRGPSVQ
QDGTSPVIAIPLGVKEGNIQWSSKVVQFSSGKEVKRIQGAAPSLPRVEVILDCSDREKEA
PRSVAERGCVDSQVEGGQSEAPPSLLSFAIPSEGTEQGEDDQHSERDHRPLKHRARHARL
RRSESLSEKQVKEAKSKCKSIALLLTAAPNPNSKGVLMFKKRRQRARKYTLVSYGTGELE
RDEDEGEEGEGEEGDKENTFEVSLLATSESDIDEDFFSDIDNDNKIVTFDWDSGLLEVEK
KIKSGDEMQTLPESTGKGALMFAKRRQRMDQITAEQEEMKARTVHTEERREATMSESFQK
VSSSVYQTKEEEMSRQQTCVSKSYTDMSQNHSKMVQQNGFGLAPDTNLSFQSSEAQKVAS
LNKTAKPFPSGVQNRAAAPFSPTRNVTSPLSDIPAPPPYCSISPPPEALYRPVSAPVASR
AAPTVWSSTEPTEHIASRDERIAVPAKRTGILQEAKRRSTSKPMFTFKETPKVSPNPALL
SLVHNAEGKKGTGAGFESGPEEDYLSLGAEACNFMQTQASKQKAPPPVAPKPSLKVSPTA
GTPVSPVWSPPAVASNKAPSFPPPASPQAAYPAPLKSPQYPHSPAHPPSTLNLAGPFKGP
QATLASPNHTPKTPPVTPSAGGTKPPFEMPPAMSGKGAQLFARRHSRMEKYVVDSETVQA
NMARASSPTPSLPASWKYSSNVRAPPPVAYNPIHCPSYPPAATKTSSKSAAATKNTKRKP
KKGLNALDIMKHQPYQLDASLFTFQPPSTKESFPIKQTSKLSTSKQALPLRPPSAGSPTN
VRASSVYSVPAYSSQPSFQSNASIPVNESCSPTSYSAFSKPETTTSSLFTAPRPKFSAKK
AGVTAQEGSSGRSLSLPGRPSSFISRAMSPPSPLIFQPAPDYFSKPDTAADRPGKRLTPW
EAAARSPLGLVDEAFGPQNMQESIAANVVSAARRKTLPEPPDEWKKKVSYEPPAPSGSVA
LLGGKKSGIIPSPKSSLSAPSAATQAGSQLQYAYCSQRSRTDPDIMSMDSRSDYCLSTAD
SNYNPQPRGWRRPT
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctaactgcaccaggaaaatgggcacaggggattatctctgcattgctatgagt
ggaggggcgccttggggctttagattgcaaggtggcaaggagcaaaagcagcctttgcaa
atcgccaaggttcgcagcaagagcaaagcagctaaggccggactctgtgagggagatgag
gtggtgtctatcaatggcaagccttgtggagacttaacctatgctgaagttatcgttctg
atggaaagcctgactgacgtcctgcagatgcttatcaagagatcctccaatggaataaat
gaaaccttgagtgctgaaagagaaaatggaaagcaggataacataaaaaatgaggactat
agagagagtactacactgcaaattaacacagcgaaagagacaccccatggaggtttatgc
atcacagagatatacagtgagactcaccaaggagcaggagaaagcaacatacacttttct
gaaacaaaacaagagaccacacaaagccacagaattactcctaaagtgataggcacctcc
aaagtgctcatgacagatgaggctgctttcagagggaagacagaagaaagaaggccaggt
actatggttgagctgcagttgtccctctcaaatgacgcgcacaagggcaccaatgctcct
gctgtgactctcttaggggcagaaaaatgcaccccttcaggaagaggacccagtgtacaa
caagatgggactagccctgtaatcgcaattcctctgggcgtgaaagagggcaacatccaa
tggtcaagcaaagtagtccagttttctagtggcaaagaggtcaagaggatccaaggtgca
gctccatctctccccagggtggaggtgatcctagactgttcggacagggagaaggaagca
cccaggtctgtagctgaaagggggtgtgttgattctcaagtggaaggagggcagtcagaa
gcacctccttccctcctctcctttgcaatcccatcagaaggcacagagcagggagaagac
gaccagcactcggaaagggatcacagacctctcaagcacagggcaaggcacgcaaggctc
cggcgaagtgagagtctgtcagaaaagcaggtcaaagaagccaaatctaaatgtaaaagt
attgcattgctgctgacagcagctcccaatcccaattccaagggggtgttgatgttcaag
aagcgtcgtcaaagggcgaggaaatatactttagttagctacggtactggggagttagaa
cgtgacgaagacgagggtgaagaaggtgaaggtgaagagggggacaaagaaaacactttt
gaagtgagtttgcttgcaacaagcgagtcggacatagatgaagatttcttctctgacatt
gacaacgacaataagattgtgacatttgactgggacagtggtctacttgaggttgaaaag
aagataaaaagtggagacgagatgcagacgcttccagagagcacaggtaaaggggccctc
atgtttgctaagagacggcagaggatggatcagatcacagctgagcaagaggagatgaag
gcacgcacagtgcatacagaggaacgaagggaagccaccatgtcagagagcttccagaaa
gtaagctcttcagtctatcaaacaaaagaggaagaaatgtcaagacagcagacctgtgtg
agcaaaagctacacagacatgagccagaatcatagcaaaatggtacaacaaaatggcttt
ggcttagcaccagacacaaacctctcttttcagtcctctgaagctcaaaaagtagcgtct
ttgaataaaacagctaaacccttcccttctggggttcaaaaccgagcagctgcaccattt
tcacccacaagaaatgtcactagtcctctttcagatataccagcaccacctccttactgc
tctattagcccaccacccgaggctttatacagacctgtttcagctcctgtagccagcaga
gctgccccaactgtgtggtcatccaccgagcccacagaacacatagcatccagagatgaa
aggattgcggtgccagccaaaagaactgggatactgcaagaggcaaagagaagaagcact
tcaaaacccatgttcactttcaaagaaacacccaaagtaagtcctaatcctgccctgttg
tcccttgtacacaatgcagagggcaaaaaaggtactggagctggttttgagtcaggacct
gaagaagactacctcagtttgggagcagaagcttgcaatttcatgcagacccaagcatct
aaacaaaaggcccctcctcctgttgctccaaagccttcactcaaggtctctcctactgct
ggtactccagtttcaccggtttggtcacctccagctgtggcttctaacaaggctccttct
ttcccaccaccagcctcacctcaggcagcatatcctgcaccactcaaatctccacagtat
cctcattctcctgcccatcccccaagtactctcaatctagctggtcctttcaaagggcct
caggcaaccctagcgagtccaaaccatacacccaagacaccaccagtcacaccaagtgct
ggaggaacaaagccaccctttgagatgccaccagctatgagtggaaaaggagcacagtta
tttgccagaaggcactctcgaatggagaagtatgtggtggattcagagactgtgcaggca
aacatggcacgagcctcatctccaactccatctttaccagcttcttggaaatattcatct
aatgtccgagcacctccacctgttgcttataatcccatccactgcccatcttaccctcct
gctgctaccaagacctcctctaagtctgctgctgctaccaaaaatacaaaaagaaaacct
aagaaaggtctcaatgctttggatattatgaaacatcaaccttatcaactcgatgcatct
ttatttacttttcaacctcctagtactaaggaaagctttcctattaagcagacatcgaag
ttgtccacttcaaagcaagctctacctttaagaccacctagtgctggctctcctactaac
gtccgagcatcttcagtgtactccgtgccagcctacagttcacaaccttcgttccagtca
aatgcctctatcccagtaaatgaatcatgttcacctacaagctactctgcattttctaag
ccagaaaccaccacatcctctttatttactgctccgaggccaaaattttcagcaaagaaa
gctggcgtcactgcacaggaaggaagcagtggacgctcattatcacttcctgggagacct
tcttcattcatttctcgagccatgtctcctccttctcctcttatatttcagcctgcccct
gattacttcagcaagccagacacagcagctgacaggcctggcaagagactgactccctgg
gaagcagcggcaagatcccctcttggcctagtggatgaagcttttgggccccaaaatatg
caggaatccattgcggctaacgtagtatcagctgctcgcaggaaaacacttcctgagcca
ccagatgaatggaaaaaaaaagtttcttatgagcctccagccccaagtggtagtgtagcc
ttattaggagggaagaaatcgggtattataccatcccccaaaagctccctgtctgcccca
agtgccgccacacaggctggctctcagctgcagtatgcttactgcagtcaacggtccaga
acagatcctgatataatgtccatggattccaggtctgactattgcttgtcaacagctgat
tcaaactacaatccacagccaaggggatggaggcgtccaacatga
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