Calonectris borealis (Cory's shearwater): 142083046
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Entry
142083046 CDS
T11211
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04140
Autophagy - animal
cbor04142
Lysosome biogenesis
cbor04148
Efferocytosis
cbor05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
142083046 (VPS39)
04140 Autophagy - animal
142083046 (VPS39)
04148 Efferocytosis
142083046 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
142083046 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbor04131
]
142083046 (VPS39)
Membrane trafficking [BR:
cbor04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
142083046 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
LIF1_N
DUF4145
Lgl_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
142083046
NCBI-ProteinID:
XP_075008180
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All DBs
Position
5:42023549..42055060
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AA seq
875 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDIGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQQSDTGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWRLIPVSI
ATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIPYLEHIIHVW
EETGADFHNCLIQLYCEKVQGLMKEYLNSYPADKTPVPAGEEGGDLGDYRKKLLLFLEKS
SWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENYCHKHYDRNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcacgtaccgatcctggagaagctgcccctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttctgctttac
aggatcaaaaaagacataggttgcaataggtttgaagtgacactagagaaatccaacaag
aacttctcaaaaaagattcagcagattcatgttgtttctcagtttaaaattctggtcagt
ctattagaaaataacatttatgtccatgacttgttgacatttcaacaaatcaccacagtt
tccaaggcaaaaggtgcatctctcttcacttgtgatcttcagcagtcagatacaggagaa
gaggtgctgagaatgtgcgtggcagtgcggaagaagctacaactttatttttggaaggac
agagagttccatgaactacagggggacttcagtgtacctgatgtacccaagtctatggcc
tggtgtgaaaactccatctgtgtaggcttcaagagggactattacctgatacgggtggat
ggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaaccattggtagct
cctgtagcagatggaaaagttgcagttggccaagatgatctaacagttgtgctcaatgaa
gaaggaatctgtactcagaaatgtgccttgaattggacagatattcctatagccatggaa
caccagcctccctatatcattgctgttctgccaaggtatgtggagatccgcacttttgaa
ccccggctgctggtacagagtattgagctgcagagaccacgcttcatcacctctggaggc
acaaatattatatatgtggcaagtaatcactttgtttggcggctcattccggtgtccata
gccacacagatccagcagcttctgcaggacaagcagtttgagttggctttgcagttggca
gaaatgaaagatgattcagatagtgagaagcgacaacaaattcaccacataaagaacctc
tttgccttcaatctcttctgccagaagcgctttgatgaatccatgcaagtttttgccaag
cttggtacagatcccactcatgtgatgggtctgtatcctgacctcctgcccacagattac
agaaaacagctacaatatcccaaccccctgccagggctgtctggggcagagctggagaag
gcacatttagctctgatagactacctaactcaaaaaagaagtcaactggtgaagaagcta
aatgattctgaccatcagtccagtacctcaccgctcatggaaggaacacccacgatcaaa
tccaaaaagaagctgctacaaatcattgataccaccctgttaaagtgttacctccataca
aatgtagcactggtggcaccattgctacgtctggagaacaatcactgccatattgaggag
agtgagcatgtactaaagaaggcacacaaatacagtgagctgataatactgtatgagaag
aaaggtctgcatgagaaagcattacaggtactggtggatcagtcaaagaaagccaactcg
cctttgaagggtcatgagaggacagtgcaatatctgcagcatttgggcacagagaacttg
cacttggtattttcctactctgtgtgggtgctaagagattttcctgaagatggactgaag
atatttacagaagacctccctgaagtggaagctttgccacgagacaaagtgctcagtttc
ttgatagaaaattttaaaagcttgactattccttatctggaacacatcattcacgtttgg
gaagaaaccggtgcagactttcacaactgtttgatccagctgtactgtgagaaagtgcag
ggcttaatgaaagagtatctcaattcttaccctgcagataaaactccagtgcctgctggg
gaggaaggaggagacttgggggattaccggaaaaagcttctactttttctagagaagtct
agctggtatgaacctagtcgactaattagcgacttcccctttgatggtctcctagaagaa
cgtgctctgctcttgggtcgtatggggaagcacgagcaagctctgtttatttacgttcat
attttaaaggataccaacatggctgaaaactattgccataaacattatgacagaaacaaa
gatggcaacaaagatgtctatctgtcactgctccggatgtatctctccccacctagtgtt
cattgcctgggaccaatcaagatggaagtgctggagcctcaagccaatctgcaggctgct
ctgcaggttttggaactacatcacagcaaactggataccaccaaggcgataaacctactc
ccagcaaatacacagattagtgagattcggatcttcttagagaaagtccttgaagaaaat
gctcagaagaaaagatttaatcaagtactcaagaatcttctccatgctgagtttctgagg
gtccaggaggagcggatcttgcatcagcaagtgaagtgcattattacagaggagaaggtg
tgcactgtatgtaaaaagaagataggtaacagtgcatttgctcgataccctaatgcaata
gttgtgcattatttctgctccaaagaagtcaacacattggacacctga
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