Calonectris borealis (Cory's shearwater): 142083347
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Entry
142083347 CDS
T11211
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142083347 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbor03041
]
142083347 (PRPF40A)
Spliceosome [BR:
cbor03041
]
Complex A
U1 snRNP components
U1 related factors
142083347 (PRPF40A)
Complex B
142083347 (PRPF40A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
142083347
NCBI-ProteinID:
XP_075008734
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All DBs
Position
6
Genome browser
AA seq
1028 aa
AA seq
DB search
MSGGDSAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKSTRLAGRPDWP
AGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCSGGSLLSPSMRPGGVDRGSL
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTATTNSSVN
EEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGK
PYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEESTPTTSAPAAAAEATNTTTTATT
AAEAAAAVTTTTAASAATAAPEAESAAATSVVENESTGTAAAEEQGQATSTPAVQEQSGE
TAANAADDSSKQEASGDAASKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNAS
WEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENH
EKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEAL
KNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEE
EKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPV
FSSGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRAT
TLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDI
RDRFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRS
GSESEDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDI
EREKDKKERERESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTL
LEQLDEDQ
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggggattcggcggcggcggcggcgaccgcctccccgcagccgctcccgttc
tccttgccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgccccgta
gcttccgccgcggaccaatcgccgaagagcacccgactggcgggccgtccggattggccg
gccgggaagccagtcagcctgctggccccgttgctcccgccccgcggggagcccgagccg
ctcatgccctttggcccctcgtcgcggcagccactcagagggcggcttcttggcaggtgc
agcgggggcagtctgctgagcccctcgatgcggcccggcggcgtcgaccgcggctccctc
atgatgggacacccaggcatgccacattatcctcccatgggaatgcacccaatgggtcag
agaccaccaaatatgccgccagttccccacggtatgatgcctcagatgatgccccccatg
ggaggaccaccaatggggcagatgcctggaatgatgcagtcagtaatgcctggaatgatg
atgtctcacatgtctcaagctgctatgcagcctacggttccgccaggagtgaacagtatg
gatgcacaagtaggtgtaacacctcctggaactcaaagctctgttttgtttcgccctcag
acaacacatcccgtagtttgtgcagcccagcaaactgccacaaccaacagttctgttaat
gaagagcactctaaacagaaatctacatggacagaacacaaatcacctgatggaagaaca
tattattataatactgaaacaaagcagtctacatgggagaagccagatgatctcaaaaca
cccgctgagcaattgttgtctaagtgtccctggaaagagtataaatcggattctggaaag
ccctactattataattcccaaacaaaagaatcgcgctgggcaaaacccaaagagcttgag
gatcttgaagcaatgattaaagctgaagaaaacagcacaaaacccgaagaatcgactcca
acaacatctgctccagctgctgcagcagaagccacaaacacaaccaccacagccacaacc
gctgctgaagctgctgcggctgttactaccaccactgctgcttctgcagcaacagcagcc
cccgaagcagaatctgctgcagctacttctgttgtagaaaatgagagtactggcacagcc
gcagctgaggaacagggacaagcaacttctacacctgctgtgcaggaacagagtggagaa
actgcagctaacgcagcagatgactcttccaagcaggaggcttcgggagatgctgcttca
aagaaagaggacgatgatgctcaaccagttaaaaaaacctatacatggaatacaaaagaa
gaagcaaagcaagcatttaaagaactgttaaaagaaaagcgagtaccatccaatgcttct
tgggagcaagctatgaaaatgatcattaatgatcctagatacagtgctttggcaaaatta
agtgaaaaaaagcaagcctttaatgcttacaaagttcaaacagaaaaagaagagaaagaa
gaagcaagatcaaaatacaaagaagctaaagaatccttccagcgttttcttgaaaaccat
gaaaagatgacatccacaacaagatacaagaaagctgaacaaatgtttggagagatggaa
gtctggaatgcgatatctgagcgtgatcgtcttgaaatttatgaagatgtcttgtttttt
ctgtctaagaaagagaaggaacaagctaaacagttacgaaagaggaattgggaagcttta
aagaacatactagataatatggctaatgtcacttactgtactacttggtcggaggctcag
cagtatctgatggacaatcctacatttgcagaagatgaggaacttcagaacatggataag
gaggatgcactgatctgttttgaggaacacattagggcattggaaaaagaggaggaagaa
gaaaaacagaaaagtttgcttagagaaagaaggcggcagcgtaaaaatagagaatctttt
cagctatttttagatgaactgcacgagcatggacaattacattcaatgtcctcttggatg
gagttgtacccaaccataagctctgacatcagattcactaatatgcttggtcaacctgtt
ttttcatcaggatcaacagcacttgatcttttcaagttctatgttgaagacctgaaagca
cgttaccatgatgaaaagaagataataaaagatatcttaaaggataaaggatttgtggtt
gaagtgaatacttcctttgaagattttgttacggtcatcagttcaactaaaagagctact
actttagatgcaggaaatatcaagctggctttcaacagtctgctagaaaaggcagaagcc
cgtgaaagagagagggaaaaagaagaagctcgcaaaatgaagcggaaagagtctgccttc
aagagtatgttgaagcaagctactcctcccattgaattggatgctgtctgggaagatatc
agagatagatttgtgaaggaaccagcatttgaagacatcactctggagtctgaaagaaaa
agaatatttaaagatttcatgcatgtactagagcacgagtgtcagcatcatcattcaaag
aacaagaaacattctaaaaagtctaaaaaacatcacaggaagcgatcacgttctcgttcg
ggctcggagtctgaggatgatgatagccattcaaagaagaaaaggcagcgttcagaatct
agatcagtttctgagcgttcttccagcgcagaatctgagagaagttacaagaagtcaaaa
aaacacaagaaaaagagcaagaagcgaagacataagtctgattcaccagaatcggatatt
gaacgagaaaaagacaaaaaagaaagagagagagagagcgaaaaggatagagctagacaa
agatcggaatcaaaacataaatctcctactaaaaaacgacctggaaaagattctgggaac
tgggacacttctggcagtgaactgagtgaaggggagttggaaaaacagaggaggactctt
ttggaacaactggatgaagatcaatga
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