Calonectris borealis (Cory's shearwater): 142083751
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Entry
142083751 CDS
T11211
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
cbor Calonectris borealis (Cory's shearwater)
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142083751 (PMS1)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
142083751 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
142083751
NCBI-ProteinID:
XP_075009761
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All DBs
Position
6:complement(35433021..35481695)
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AA seq
933 aa
AA seq
DB search
MKQLSAETIRLLSSSQVITSVVSVVKELIENSLDASATNIDIKLEDYGFHKVEVRDNGNG
IKVADVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICCISEVLITTKTAADDISTQ
YALDSNGHITSKKPSHLGQGTTVTVLKLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMGSMVPFQHCCEDPEINLSGFL
PKAESDTSLTSLSSSERSFIFINNRPVHQKEILKLIRQYYSLVTHKDCTRLYPVFFLNIT
VPASAVDVNLTPDKTQVLLHYKESVLLAVENVLKSLYGPLPATVPGESNKTDVTSEDMFV
HRTEQTDVVVNEMGPSGNDDLHARTSFLSFSNDVQNCQVGKNTEICLNHQTFCGDNVRSR
LDKKEVSKSDAFPDSSLNLLCEKEQNGQNMTDIQSNSVPVDPKSKKADEHLLSSDNIDEI
EKNEDALVPKDLPEISADNWSMGSGFKNHLGDNLEPVKILIPEVGGTINKQNEHTGEQSN
DPQISNQSIKKRNVISDKFGHVTAYDLISSRIIRKPKSAIGFFTQECRPKLITDNPKTSM
EDILLKIEEQWKNLNEEEKKNYEIKAAKDVERYNREVKKAMGQTVHRPTKEAEKQKSKLK
TSPSDQQKLDKIFHAQIEKKRKPEQSTKTVTVPFSLSSCRHQLQRHEKNDSDEHELFLIR
RQSFPDVWIFATEKKLMLLNPYRLEEALLRQRLLMNHKLPVEKLDKPIVLTDSLIGGSQY
MAALYKMQKDYQSFNGSGYLSDPRLVANGFKIKVIEGASAAESHLEIEGMANCLPYYGIS
DLKEILNAVVNGNAKEVYECRPLKVVNYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQL
GKENKGCVHGRPFFRHLTDIPEVDKHNSMEIIQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgtcggcggaaactattcgtctcctttcaagttctcaggtgattacatca
gttgtcagcgtggtgaaggagctgatagaaaattccttggatgccagtgcaacaaatatt
gatattaaattggaggattatgggtttcacaaagtagaagtaagagacaatggcaatgga
atcaaggttgctgatgttccagttatggcaattaaacactacacctcaaaaataagctct
tctgaggaccttgaaaggttgacaacatacggtttccgtggggaggctttgggatcaatt
tgctgcatatcagaggttttgatcacgacaaagacagctgctgatgatatcagcactcag
tatgctttggatagcaatgggcatataacttctaaaaagccttcccatcttgggcaaggt
actacagtaacagtcctaaagttgtttaagaatcttcctgtaagaaagcagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
atcataaaaccagacctgaggataaccttaacgcataataaggcagttatttggcagaag
accagggtgtcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgggc
agtatggtaccttttcaacactgctgtgaggatcctgagataaatctttctggatttctc
ccaaaagctgagtcagacacttctttgacaagcctttcaagttcagaaaggagtttcatt
tttataaataatcgtccagttcatcagaaggaaatactgaagttaattcgacagtactac
agtctggtgacgcacaaggactgtactcgtttatatcctgttttctttttgaatattact
gtacctgcctctgctgtggatgtgaatttaacacctgataaaacgcaagttttactgcat
tataaggaatctgtcttacttgctgttgaaaatgtgttgaaatcactgtatgggccacta
cctgctacagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
catagaacagaacaaacagatgtggttgttaatgaaatgggaccatctggaaacgatgat
ctacatgctcgtacttcattcctttcgttcagcaatgatgtgcaaaactgtcaagtagga
aaaaacacagagatctgcttaaatcatcagacgttctgtggtgataatgtacgtagtcgc
ttggacaaaaaagaagtttctaagagtgatgcctttccagacagttccttaaatttattg
tgtgagaaggaacagaatggacagaatatgaccgatattcaaagtaacagtgttcccgtg
gaccccaagtctaaaaaagccgatgagcatcttttgagttctgataatattgacgaaata
gaaaaaaatgaggacgccttagtccctaaagacttacctgaaatctctgctgataattgg
agtatgggaagtggatttaaaaaccatctaggagacaacctggaacctgttaagattttg
attcctgaagttggaggaacaattaataagcaaaatgaacatactggtgaacaaagcaat
gatccacaaatctcaaatcaaagcataaagaaaagaaatgtgataagtgataaattcggg
catgtgacggcttatgacttaattagtagtagaataataaggaaaccaaagtctgcaatt
ggatttttcactcaagaatgtcgtccaaaattgataactgataatccaaagaccagcatg
gaggacatcctgctgaaaattgaagagcagtggaagaatttgaatgaagaggaaaaaaaa
aattatgaaataaaagctgctaaagacgtggaacggtacaacagagaggtcaagaaagct
atgggacagacagtgcaccgaccaacaaaggaggcagaaaaacagaaatccaagctgaag
acttccccatccgaccagcagaagcttgacaagatatttcatgctcaaattgaaaagaag
cggaaacctgaacagtctacgaaaactgtgacagtgcctttttctctgagttcctgtaga
catcagcttcagagacacgagaaaaatgattcagatgaacatgaacttttcctcatccgt
cgtcagagttttcctgatgtctggatatttgctactgaaaaaaagctaatgttgctgaat
ccatatagattggaagaagccctgctacgtcaaagattactgatgaatcataagcttcca
gtagagaaactggacaagccaattgtgttaacggacagtcttattggtggatctcagtat
atggctgctctttataaaatgcagaaggattaccagagcttcaatggatcaggttatttg
tcagatccaaggcttgtagcaaatggattcaagataaaagtgatagaaggtgcttcagct
gcagaaagtcatctggaaatagaagggatggcaaattgtctgccatattacggtatttct
gatttgaaagaaattctgaatgcagtagttaatggaaatgcaaaggaagtatatgaatgt
aggcctctcaaagtggtaaattacttagagggagaagcagtacgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtacaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgtgttcatggtcgtcctttttttcgtcacttaacagatatt
ccagaagttgacaagcacaactccatggaaattattcagtaa
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