Calonectris borealis (Cory's shearwater): 142084362
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Entry
142084362 CDS
T11211
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
142084362 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbor03021
]
142084362 (TAF5)
03036 Chromosome and associated proteins [BR:
cbor03036
]
142084362 (TAF5)
Transcription machinery [BR:
cbor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
142084362 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
142084362 (TAF5)
Chromosome and associated proteins [BR:
cbor03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
142084362 (TAF5)
STAGA complex
142084362 (TAF5)
TFTC complex
142084362 (TAF5)
SAGA complex
142084362 (TAF5)
SLIK complex
142084362 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
Tricorn_2nd
PEP5_VPS11_N
CDK5RAP3
Beta-prop_ACSF4
VID27
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
142084362
NCBI-ProteinID:
XP_075011066
LinkDB
All DBs
Position
7:30003615..30014999
Genome browser
AA seq
788 aa
AA seq
DB search
MAALPEEPAEVVTVKPDPEAGTPPQPPAAAPPAAAAAPAAPPVAAAEGEAAGSGGDAAPA
KPAAPGPAASPAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGAAALSPAGAG
LLGVPGGDGDSAGGEALLSRVTAATAIAIGGSAATVASSSPGVAAVAAVPPGKVGGGIVV
EDQPDVSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV
YNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRD
SYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKV
FFGLLKEPEFDVPLDDEDEEGENEEGKPKKKKPKKDSVGSKSKKQDPNAPPQNRIPLPEL
KDSDKLDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADS
TVRVWSVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFS
PDRNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLW
ATDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKGPI
YSLAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMD
NTVRLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLL
AAGAYSSQ
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggcggcactacctgaggagccggcggaggtggtgacggtaaagccggaccctgaggcg
gggacgccgccacagccccctgctgctgctcctccagccgccgccgccgctcccgccgct
cccccagtcgcggcggcggagggggaggcggcgggaagcggtggggatgcggcgcccgct
aaacctgcggcaccgggcccggccgcctccccggcggcgctggaccggcagactctcgtg
gccgtgctgcagttcctgcggcgcagcaacctccgcgagtccgaggagattctgcgccgc
gaagcccgcctgctcggcgacgacctcggcgctgctgccctcagccccgccggcgccggg
cttctgggagtcccgggcggcgatggggactccgccggcggcgaggcgctgctcagccgg
gtcactgccgctaccgccatcgcgataggaggcagcgccgccactgtcgcatcttccagc
cccggcgtagcggcggtcgccgccgtgccgccggggaaagttggaggaggcattgttgtg
gaagatcagccagatgtgagtgcagtattatctgcctacaatcaacagggggacccaacg
ctgtatgaggaatactacagtggattaaaacacttcattgagtgttctctggactgtcat
cgagcagaattgtctcagctgttttatcctctttttgtgcacatgtacttggaattggtc
tacaatcaacatgagagtgaagcaaagtctttttttgaaagatttcatggggatcaggag
tgctattaccaggatgacctgcgtgtattatctagtttaaccaaaaaagaacatatgaaa
ggtaatgagaccatgctggatttcagaacaagcaagtttgtgctgcgtatttcccgtgac
tcttaccaactcttgaagaggcatcttcaggagaagcagaacaatcagatctggaacatt
gttcaggaacatctttacattgatatctttgatggaatgcctcgcagtaaacaacagata
gatgctatggttggaagcttggctggggaagcaaaacgagaggctaataaagcaaaggtt
ttctttggcttattgaaagaaccagagtttgatgtgcctttggatgatgaagatgaagaa
ggagaaaatgaggaaggaaagccaaagaagaaaaaacctaaaaaagatagtgtagggtca
aaaagtaaaaaacaagaccctaatgctcctccccaaaacagaattcctctgcctgaactg
aaagactctgacaagctggataaagtaatgaatatgaaggaagctgcaaggcgtgtgcgt
cttggcccagagtgcctgccttccatctgtttctacacgttccttaatgcttaccagggt
ctgactgcagtggatattacagatgactctagcatgattgtaggagggtttgctgactct
actgtcagagtgtggtctgtgactccaaaaaaactacgtagtgtgaaaacagcagcagac
ctcagtctcattgacaaagaatcagatgatgtcttggagagaatcatggatgagaaaaca
gcaagtgagttgaagattttatatggtcacagtggacctgtctatggcaccagcttcagt
cctgataggaactatctgttgtcctgttctgaggatggcactgtcagattgtggagtctc
caaacattcacgtgtttggtgggatataaaggacacaactatccagtatgggatacacaa
ttctctccttatggttattactttgtgtcagggggacatgacagagtggctcgtttgtgg
gcaacagatcactaccagcctttacggatatttgctggccatcttgctgatgtgacgtgt
acccgatttcatccaaactccaactatattgccacgggctcagcagacaggactatacgg
ctctgggatgttttgaatgggaattgtgtaagaatatttactggacataagggaccaatt
tattcattggcattttctcccaatggacgattcctggctactggagcaacagatggaaga
gttctgctgtgggatattggacatggcttgatggttggagaattgaaagggcacactgac
acgatctatgcgctcagattcagcagagatggggagattttagcatcaggttcaatggat
aacacagttcgtctgtgggatgctgtgaaggcatttgaagatttagaaactgatgacttt
actacagccactggacatataaacttgcctgaaaactcacaggacttgttactaggtaca
tacatgaccaagtcaaccccggttgtacacctccattttacacgcagaaacttgctgctg
gctgcgggagcctacagttcacagtaa
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