Calonectris borealis (Cory's shearwater): 142084372
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Entry
142084372 CDS
T11211
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
142084372 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF5006
DUF4869
Motif
Other DBs
NCBI-GeneID:
142084372
NCBI-ProteinID:
XP_075011089
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All DBs
Position
7:complement(30644606..30703564)
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AA seq
1524 aa
AA seq
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MKGGNGMDSVTKKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEK
RSYTHGSSYVTSSGSARLNSSSSPSGYRQTQSPSSTLTKSPGSTFERKTYVNRHATYEGS
SSANSSPEFPRKEFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSAS
CSPTRSPSSTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPSYMWSSTLPAGSSLG
GYHNSSSLINAMSHSTGSVFGVPNNLAPSNHTLNAGLSTSSTVFGVQNNLSPSSSTLTQN
ATAASAAYGMKNTSQSNTMASTGVSASAGGTVLSSQGDDILRKDCKFLLLEKENAPAKKE
MELLIMTKDSGKVFSASTTGLNGGSFVEDTLKKEKQGFSSSYATDTGLKSDANGGLKSVP
TRDKATYAEIRNGDAAGAIGSAPSWCPCGSCCSWWKWLLGLLLAWLLLLGLLFGLIALAE
EVRKLKSRVENLEKINDGLLTINQGNSKIEKDVSRVDFLHGISPSSTFPYENEESVWLMV
KNRLNKEIEQGYFRGERGEPGEKGDMGMQGPRGERGLPGVPGIPGPIGHQGPEGPKGQKG
SMGDPGMEGPIGQRGREGLPGPRGEPGPPGFGEKGDRGVVGERGPPGPPGPPGSAGLKGL
MGSPGPQGPPGPPGLQGFRGEAGLPGAKGEKGATGAPGPKGDQGEKGSRGMTGEQGSRGM
PGPPGEPGAKGPVGQAGRDGQPGEKGEPGLMGMPGARGPPGPSGDAGQPGLTGPQGPPGL
PGNPGRPGTKGEPGAPGKVISAEGSSTITLPGPPGPPGPAGPTGPPGVPGPVGPAGLPGQ
QGPRGEKGSPGEAVIETIKTEVSSLTSQMLADLQGRAGPPGPPGPPGESVQGPPGPRGPP
GEGLPGPPGPPGRPGSSMSTSETFFTGPPGPPGPPGPKGDQGERGPRGFTGEPGEPGLSA
LSSHGDRITMQGPPGVPGPPGPPGPKGDAGVPGAPGIPGASRGGSRQIQGPPGPPGPPGP
PGPGGSSSQEIQQYVTDYLKSDNVRHYLTGAQGPPGPPGPPGVITTADGTNLDYAELATR
VMSYMTSSSDRYQSFASSVSTTSVLYQELLDMLQREEIRQYLIGPRGPPGPPGPGGDGMS
LSLDYDELTRRFISYLTSSGMSIGLPGPPGPPGTPGISYSDLTTYLRNSEFSGLVGPPGP
AGPPGPPGIPGSPGTSLEDVSAYLQSVGYSSLSGVQGPPGPPGPPGPPGFSGTGLLSYAD
ITHSDEFRSELIQYLKSDEVRSYISGPPGPPGPRGPPGPKGDSGLVAGSMSSSYQGLRTS
ERLHGGSLGAEGSHGGSLGTGSSYGSSMSSMSSYSASAGSDGSYDASMGSDGSFDGLLTE
EESHRRSTSSSRSYSNAFTGSLDYNELALRVSESLQNRGILQDLMSYTAQGLPGPPGPPG
PPGISRVFAAYGNVTEDLMDFFRTYGTIQGPPGEKGERGYPGPKGDPGPMGPPGRHGHRG
PKGEKGEKGEQVYVGRRKRRSVGV
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtggcaatggtatggactccgtaacaaagaaaacgaggcaagatggatcagaa
gttactgaaagacttattacagagactgtaaccacaagactgacgtccttaccacccaaa
ggagggagcagcagtgggctcaaaacatcatcccacactggagggagcggagtggaaaag
aggtcttacacccatggcagcagctatgtgacttcaagtggaagtgctagattgaattca
tcatcatccccctccggctatagacaaacccagtctcctagctctactctcaccaaatca
cctggctcgacatttgaaagaaaaacctatgtcaaccgccatgcaacatatgaagggagc
tccagtgccaactcttctcctgagttccccagaaaagagtttgcatctgcctccacaaga
gggagaagccaaagtcgggagagtgaaatacgagtccgactgcagagcgcatctccctct
ggcagatggacagagttggatgatgtgaaacgtttgctgaaaggaagtcgatcagccagc
tgcagcccgactcgatcaccgtcaagcacgctcccgataccaaaaaaagccgtggtggag
acaaagatggttactgagagctctcagtcagtgtcggggacatatgatacaaccatactg
aataccgccctcccttcatacatgtggtcctccactctgcctgctgggtcttcccttggt
ggataccataacagctcttccttgatcaatgctatgtctcactctacgggatcagttttt
ggtgttccaaataacctggctcccagcaatcatactctgaacgcaggcctgagcacttcc
tctacagtgtttggagttcaaaacaacctgtctccaagctcttcaaccctgacccagaat
gctactgcagcctccgcagcatatgggatgaagaacacttctcagagcaacaccatggca
agtactggtgtgtctgcctcagcagggggaaccgttctgagctcccagggagatgacatt
ctgcgcaaagactgcaagttcctgctgctggagaaggagaacgccccagcaaagaaggag
atggagctcttgatcatgacaaaggacagtggcaaagtctttagtgcctctaccactggg
cttaatggaggatcctttgtagaagacaccttgaagaaagagaagcagggattttcctcc
tcttacgctacagatactggcctaaaatcagatgcaaatggaggactgaaatctgtgcca
acaagagacaaagcaacttatgcagaaatacgaaatggtgatgcggcgggtgcaatcgga
tcagcaccatcctggtgtccctgtggttcctgctgcagctggtggaaatggctcctgggt
ttgcttctggcctggttgcttctccttggattgctttttggactcattgctctggcggaa
gaagtgagaaagctgaaatctcgtgtggaaaacctggaaaaaatcaatgacggcctcctg
acaattaaccaagggaattcaaaaatagaaaaagatgtttcaagagtagactttcttcat
ggtatttcaccctcctcaaccttcccatatgaaaatgaagagtcagtttggttgatggtg
aagaacagactgaacaaggaaatagaacaaggctacttccgaggggagagaggagaacct
ggtgagaaaggtgacatgggaatgcaaggtcccagaggagagcgaggacttcctggtgtc
ccaggcattcctggtccaattgggcaccaagggccagaaggaccaaaaggacagaaaggc
agcatgggtgatcctggcatggaaggtcccataggacaaagaggtcgagaagggctacca
gggcctcgaggggagcctggaccacctggatttggagaaaaaggagacagaggtgttgtt
ggtgagcgaggtcctccagggccacctggtcccccaggttctgctggccttaaaggtctg
atgggttctccaggcccacaaggtcctccaggtcctcccggcctacaaggatttagagga
gaagcaggtctcccaggtgctaaaggtgagaaaggagccactggagcccctggacccaaa
ggtgatcagggtgagaagggttctcgtggaatgacaggtgaacaaggctcaagaggaatg
cctggtcctccaggagagccaggggctaaaggacctgtaggacaagctggccgtgatgga
cagccaggtgaaaaaggtgaaccaggtcttatgggaatgccaggagcccgaggccctcca
ggaccctctggagatgcaggacagccaggtctcacaggaccccaaggaccgccaggactt
ccaggcaacccaggccgaccagggactaaaggagaacctggagctccaggaaaagtcata
agtgctgagggttcgtcaactattactctgccaggcccaccaggtcccccaggcccagct
ggccccactggacccccaggtgttccaggtcctgttggaccagctggtctccctggacag
caaggtccacggggcgagaagggatccccaggtgaagctgtgatagaaactatcaaaaca
gaagtctcatcattaacatctcaaatgctggcagatttacaagggcgagcaggacctcca
ggtccccctggaccaccaggtgaatctgtgcagggaccccctggacctcgtggcccccca
ggagaaggattgccaggacctccaggcccaccagggagaccaggatcttccatgtccacc
tcagaaacattcttcacaggcccaccaggtccaccaggcccaccaggcccaaaaggagac
caaggtgaacgaggtccacgaggattcacgggagaaccgggtgagcctggcctttcagca
ctctcctcccacggtgacagaatcaccatgcagggacctccaggagttccaggcccgcca
ggcccacctggacccaaaggtgatgcaggtgtcccaggcgctcctggcatcccaggagca
tctcgaggtggatccagacaaattcagggacccccagggcctcctggaccacctggtcct
cctggcccaggtggaagttcttctcaagagattcaacagtatgttactgactacctgaaa
agtgacaatgtaaggcattatttgactggtgcccaaggcccaccaggccctccaggccca
cctggagtcatcaccactgcagatgggacaaacttggattatgcggagctggctacccgt
gttatgagctatatgacaagttcttcagatcgctatcagtcatttgccagttcagtatca
actacatcagttttgtaccaagaacttctggacatgctgcagagagaagaaattcgtcag
tatctaattggccctcggggcccaccaggacctcctggaccagggggagatggcatgtct
ctgtcactggattatgatgagctgaccagacggtttatcagctacttgacaagttctggg
atgagcattgggctccctggaccacctgggcctccagggacacctggtatatcttacagt
gacctgacaacatacctgcgaaactctgaattcagtggtcttgtcgggccccctggtcct
gcagggcccccaggacctccagggatccccggatcacctggcacctctctggaggacgtc
tctgcttacctacaaagtgtgggatactcctccctctctggagtccagggtccacctggc
cctcctggcccgccaggaccaccaggcttctcgggaactggcctcctgtcctatgctgac
atcacccacagtgacgagttcagaagcgagctgatccagtacctgaagagtgatgaagtt
cgaagctacatctcagggccacctgggccccctgggccacggggaccaccaggacccaaa
ggagatagtggcttggtggctgggtctatgtcttcatcataccaagggttacggacttcc
gagcggttgcatggaggatcccttggtgctgagggatcccatgggggatcactgggcaca
ggcagctcatatggcagctccatgagcagcatgtcatcttacagtgcctcagcgggcagc
gatggctcttatgatgcctccatgggcagtgatgggtctttcgatgggttgctgacagag
gaggaatcacacaggagatcaacaagttcaagcagatcctatagcaacgccttcactgga
tccctggattacaacgagctggcacttcgcgtgtcagagagcctacagaaccgaggtatt
ctccaggacctgatgtcttacactgcacagggactgccaggtcccccaggccctcctggt
ccccctggcatcagcagggtctttgcagcctatggcaatgtcaccgaggacctcatggac
ttctttagaacatatggtaccatccaggggccacccggtgaaaagggggagaggggttat
cctggacccaaaggtgaccctggaccgatgggcccaccaggacgccacgggcacagggga
ccaaaaggagagaaaggagagaaaggtgaacaagtgtatgttggcagaagaaaaagaaga
agtgttggggtttaa
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