Calonectris borealis (Cory's shearwater): 142085007
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Entry
142085007 CDS
T11211
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
142085007 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cbor00536
]
142085007 (COL11A1)
Glycosaminoglycan binding proteins [BR:
cbor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142085007 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
DUF4763
Motif
Other DBs
NCBI-GeneID:
142085007
NCBI-ProteinID:
XP_075012549
LinkDB
All DBs
Position
8:complement(22767193..22932674)
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AA seq
1856 aa
AA seq
DB search
MEMQRWSTRWKTRRWPRDSAVSVLITFTILLRAAEVRGAEPVDVLKALEFHNSPEGVSRA
AGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPGGDFPEDFSILMTVKPKKGIQSFLLS
VYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MVVDCNKKTTKPLERSDKTVVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCE
HYSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETDSVTEGPPLFEETVAQ
TEKKKAMVKKKKRTVATSSKDKPQKATTKKTEKYASKKKKSYQAATKGKLGANIVDGFQE
YSIAENDYGPQTDAPSRTTEANEQNPVEEVFAEEYITGEDYDKKTEETEYGSRGVDLNES
DLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVTGHGAYGEKGQKGE
PAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGLPGADGLAGPPG
TMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGRPGPVGGPGAAG
AKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGDRGFDGLPGLPG
DKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAG
VDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGKPGLPGLPGSDG
PPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKG
DMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGAVGPAGEKGKLGVPGLPGYPGRQG
PKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGKPGPKGTAGNDG
PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVG
PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGKDGPAGLRGFPG
ERGLPGAQGPAGLKGGEGPQGPPGPVGSPGERGAAGTAGPIGLPGRPGPQGPPGPAGEKG
APGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG
PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGLPGPPGEKG
ENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGESG
TSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG
VGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGAKGEPGAEGAPG
KTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPLGPPGLPGLKGDPGSKG
EKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGPPGPPGLPGPQG
PKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYMLSDAGDNIL
DYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPDGEYWIDPNQGC
SGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGKLLSYLDVEGNS
INMVQMTFLKLLSASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSNDEEMSYDNNPYI
KALHDGCASRKGYAKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagagatggtccacaaggtggaaaacgagaaggtggcccagggactcggct
gtaagcgtgctcatcaccttcactatccttctccgggctgcagaggtcagaggagctgaa
cctgttgatgtgctaaaagcattagaatttcataattcaccagaaggagtatcaagagca
gcaggattttgcacaaacagaagggattcaaaaggatcggatgtcgcctacagagtttca
aaaactgcacagctgagtgccccaacaaagcagctgtacccaggtggagattttccagaa
gatttttcaatattaatgacagtaaaacctaaaaagggtatccagtccttccttctgtct
gtctacaatgagcaaggaattcagcaagtaggtgttgaagttggtagatcccctgttttc
ctgtttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaacagtc
aacattgctgatggcaagtggcatcgagtagctattagtgtagagaaaaaaagtgttaca
atggttgttgactgtaacaaaaaaactacaaaaccacttgaaagaagtgacaaaacagtt
gtggacaccaatggcatcactgtctttggaaccaggattctggatgaagaagtttttgag
ggtgagatccagcagctgttgattatagctgaccccagagctgcatatgactattgtgag
cattatagcccagactgtgattccccagtgcccaatgctgctcaggctcaagatcctcaa
gttgatgagtacacaccagaagattttatcgaatatgactatgagtatggggatgcagat
tataaagaaactgattctgtaacagagggacccccactgtttgaagagacagtagcacaa
acagagaaaaagaaagccatggtcaaaaagaagaagaggacagtggccactagctcaaag
gacaaaccccaaaaggccacaacaaaaaaaactgaaaaatatgcatccaagaagaagaaa
agttatcaagcagcaacaaaaggcaaactaggggcaaacattgttgatggatttcaagag
tatagcatagctgaaaatgactatgggccccagacagatgctccctccagaactactgaa
gcaaatgagcaaaatcctgttgaagaagtatttgctgaagaatacataactggagaggat
tatgataaaaaaactgaggaaactgaatatggaagcagaggagtagacctcaatgaatct
gatctgctggtagatggagatttaggcgaatatgatttttatgaatataaagaatatgaa
gagaaaccaactgattccactaatgaggagtttggtccaggtgttcctgcagaaaccgat
atcacagaaacaagcgtgactggacatggggcttatggagaaaaaggtcaaaagggagaa
ccagctgtgattgaacctggtatgctcattgaaggaccaccgggaccaagaggacctgct
ggtcttacaggtcccccaggtctacaaggtcctgttggtcctccaggtgaccctggtgaa
aggggtccacctggtcgccctggtctccctggtgctgatggtttagcaggtcccccaggt
accatgttaatgttgccgttccgctttggtggagatggtgagaagggcccaacaatctca
gctcaggaagctcaagcacaagctattcttcagcaagctaggattgctatgagaggtcca
cctggtcccatgggactcactggaagaccaggtcctgtgggtggacctggagcagcaggt
gctaagggtgaaagtggtgaaccaggtccccagggtcctcgtggtgttcaaggtgcccct
ggtccaagtggcaaagctggcaaaaggggacgtcctggagctgacggtgccagaggaatg
ccaggagaacctggtgcaaagggtgacagaggatttgatggtcttcctggcctccctggt
gacaaaggtaacaggggagaccgtggcccacagggacctcctggcttacctggtgaagat
ggatcaagaggagaagatggggaagtgggaccaagaggtctcccaggtgaagctggtcca
cggggattactgggccccagaggtacacctggtccccctggacaacctggcattgcaggt
gttgatggaccttcaggcccaaaaggaaacatgggtcctcaaggggaaccaggacctcct
ggtcagcaaggaatcccaggcccacaagggcttcctggtccgcaaggtcctattggacct
cctggtgaaaaaggacctcaaggcaagcctggccttcctggccttcctggttctgatggg
cctcctggtcatcctggcaaagagggtcagtctggagataaaggtgcattggggcctcca
ggtcctcagggtcccattggctatccaggtcctcgtggtgtaaagggagctgatggtgtc
cgtggtctcaagggatccaaaggtgaaaagggtgaagacggttttccaggatttaagggt
gacatgggccttaaaggtgaccggggagaagttggtcagccaggtccacgaggagaagac
ggtccagaaggtccaaaaggtcgagcaggtccatctggtgacccaggtgctgttggtcca
gctggggaaaagggtaagcttggtgtacctggattgccaggatatccaggaagacaaggg
ccaaagggctcaactggtttcccaggatttccaggtgccaatggagagaaaggtgcaagg
ggattacatggcaaaccaggccccagaggacagcgaggaccaacaggtccaagaggctca
agaggtcccagaggtcccactggcaaaccaggtccaaagggtactgcaggcaatgatggt
cctcctggcccaccaggtgaaaggggaccacaagggcctcagggacctgttggattcccc
ggaccaaagggacctccagggccacctggaaaagacggcttgcctgggcacccgggacag
cggggtgagactggttttcaaggaaaaactggtcctcctggtcctggtggtgttgttggc
cctcagggtcctactggtgagactggcccaattggtgaaagaggtcatccaggtcctcct
ggcccaccaggtgaacaaggcctcccaggtgctgcaggaaaagaaggtgctaagggtgac
ccaggccctcaaggcattcctgggaaagatggaccagcaggtcttcgtggttttcctgga
gagagaggccttccaggtgctcagggtccagctggtctgaaaggaggggaaggcccacaa
ggcccacctggcccagttggttcaccaggggaacgtggagcagcaggcactgctggccca
attggtctaccaggtcgtcctggacctcagggtcctccaggccccgcaggggagaagggt
gctcccggtgaaaaaggtcctcaaggtccagctggacgtgatggagtacagggtcctgta
ggacttcctggtcctgctggtcctagtggctctcccggagaagatggtgacaagggtgaa
attggtgaaccgggtcagaaaggtagtaaaggtgacaagggagaaaacggtcctccgggt
ccaccaggactccagggtcctgttggtgcccctggtatagctggaggtgacggggagcca
ggcccaagaggtcagcaagggatgtttgggcaaaaaggtgatgaaggtcctcgaggcttc
cctggccctccaggccctattggcttacagggtctgcctggcccaccaggtgaaaagggt
gaaaatggtgatgtgggcccaatgggtccacctggccctccaggtccaagaggtccccag
ggtcctaatggagctgatggtcctcaaggccccccaggctcaatcggctctgttggaggt
gttggtgaaaagggtgaacctggagaagctggtaaccctggacctcctggagaatctgga
acatctggtccaaaaggtgaaaggggagaaaaaggtgaggctggtccacctggagcagct
ggaccgccaggtgctaaaggacctccaggtgatgatgggcctaagggtaacccaggccca
gttggttttcctggagatcctggcccccctggggaacctggtccagctggtcaagatggt
gttggtggagagaagggtgaagatggtgatcctggtcaacctggcccgcccggtccttca
ggtgaagctggcccacctggtccacctggaaaaagaggacctcctggagcaactggtgct
gaaggcagacaaggtgaaaaaggtgcaaagggtgaacctggtgcagaaggggctcctgga
aaaacaggtccagttggtccacagggacctgcaggaaaacctggcccagagggtctccgg
ggcattcctggcccagtgggagaacaaggtctacctggagcgccaggtcaggatggccct
cctgggcctctgggtccacctggcttgcctggcctgaaaggagacccaggttccaaagga
gagaagggtcatcctggtttgattggcctgattggacctccaggagaacagggtgaaaag
ggtgataggggtcttcctggcccacagggatctcctggagccaagggtgatgcaggaatt
tctggtcctgctggtcctctcggaccccctggtcctcctggtttacctggtccccaaggt
ccaaaaggttccaaaggatccagcggtcctgctggacaaaagggtgacagtgggttaccc
ggtccacctggtcctccaggccctccaggtgaggtaatccagccgctgccaatccagtca
cccaaaaagacaagaagatctcctgactacatgttatctgatgctggtgataatattctg
gattattccgatggcatggaagagatctttggttcactgaattcactgaagcaagacatt
gagcatatgaagtatccaatgggcactcaaaataacccagcccgaacttgcaaagacttg
caactctgccacccagacttcccagatggggaatattggattgatcctaaccagggctgt
tctggagactccttcaaagtatactgcaatttcacagcaggtggggaaacttgcatctac
ccagataagaaatctgaaggagttagaatttcatcatggccaaaggagaatccaggatct
tggtttagtgaatttaagcgaggcaaacttctttcctatttggacgttgaaggcaattcc
attaatatggtccaaatgacattccttaaactactgagtgcctctgccagacaaaatttc
acttacaactgtcatcagtccgtagcttggcatgatgcatcatctgacagctacgacaaa
gcgctaaggttcttaggatcgaatgatgaagaaatgtcttatgacaacaatccttacatc
aaagctcttcacgacggctgtgcatcaagaaagggctatgcaaagacggtgatcgaaatc
aacacacccaaaatagaccaagtgcctatagttgatgtgatgatcaatgactttggtgat
cagaaccagaagtttggatttgaggtcggtcctgtctgcttccttggttaa
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integrated database retrieval system
