Calonectris borealis (Cory's shearwater): 142085253
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Entry
142085253 CDS
T11211
Symbol
PTCH2
Name
(RefSeq) protein patched homolog 2
KO
K11101
patched 2
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
142085253 (PTCH2)
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
142085253
NCBI-ProteinID:
XP_075013146
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All DBs
Position
8:11748389..11768770
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AA seq
1357 aa
AA seq
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MPAEPPRSAPPPLRAARRKPLPEGRAVGQRAPLWLRARFQALLFALGCRIQRHCGKVLFV
GLLVFGALAVGLRVASIETDIEHLWVEAGSRVSQELRYTKEKLGEESVYTSQMLIQTPKR
DGENILTQEALQLHLEAALAASKVQVSLYGKSWDLNKICYKSGVPIIENGMIERMIEKLF
PCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWSNLDPLQLMEELGQFTSLEGFKELLDKA
EVGQAYMERPCLDPRDPQCPPSAPNKQSQQSPDIPAELSGGCHGFSRKFMRWQEELILGG
TTKDSQGKLLRAEALQTMFLLMSPRQLFEHFKDDYEIHDISWSEEKAGAILEAWQRKFVE
LAQDSIPPNATQSVHAFSTTTLNDIMKSFSDVSAIRVAGGYLLMLAYACVTMLRWDCSKS
QGAVGLAGVLLVALSVASGLGLCSLLGISFNAATTQVLPFLALGIGVDDMFLLAHAFTET
SQHIPFKERTGECLKRTGTSVALTSVSNMIAFFMAALVPIPALRAFSLQAAVVVVFNFAM
VLFVFPAILSLDLHRREKRRLDILCCFYSPCSSRVIQIQPQELADANDNHACHPSPYGHP
SMATSTQITTTVQAFTRCDPSGHHVVTVLPPTSQVCTSPAVLLPPTDPLGSQVFAPSSST
RDLLAQLDEAKGGRECVPLPFCRWSLADFAREKYAPLLLRTRTKAVVAVLFLALLGLSLY
GTTMVHDGLYLTDIVPRDTKAHAFISAQFKYFSFYNMFIVTKGGFHYPGAQAALLSLHQA
FSTVKYVVREGNRDLPKMWLHYFQDWLRGLQATFDRDWQAGRITHDSYRNGSEDGALAYK
LLIQTGNKKEPFNFNQLTTRRLVDENGIIPPDTFYICLTVWASNDPLGFAASQANFYPPP
PEWIHDKYDTTGENLRIPAAQPLEFAQFPFYLSGLRRTADFVEAIESVRAICREAAQRHG
VLSYPSGYPFLFWEQYIGLRHWFLLAISILLACTFLVCALLLLNPWTAGIIVSILAMMAV
ELFGIMGLMGIKLSAIPVVILIASVGIGVEFTVHVALGFLTAAGSRNVRSAAALEHTFAP
VMDGAVSTLLGVLMLAGSEFDFIMRYFFAVLTVLTLLGLLNGLVLLPVLLSVIGPPPEAS
PVDNGPRLPPPEPVPPCLGPGGLYVRRAPAWPAAFPDPSDTERYAESVGPGSPRGPFIVP
PAPAHILLEAGKDPSFPRITVLKPYKDSPEVQEKKEAPGPQPTPSLPFGEPCPALPRDYP
QYCPLGAQPAPPAALPAYSTHLQGPAGSYTTVTATASVTVALHPTLPGSYPNFGPEGFAS
GERDCLEEPSMPSTGGTAMPNAFEMQSIGRRGAGTQR
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgccggccgagcccccccgctccgcgccgccgccgctccgcgccgcccgccgcaagccg
ctgcctgagggcagggccgtgggccaaagggccccgctgtggctgcgggcccgctttcag
gcgctgctcttcgccctgggctgccggatccagcggcactgcgggaaggtgctcttcgtg
gggctgctggtgttcggggcgctggccgtggggctgcgggtggcctccatcgagaccgac
atcgaacacctctgggtggaagcgggcagccgggtgagccaggagctgcgctacaccaag
gagaagctgggcgaggagtccgtctacacctcccaaatgctgatccagaccccgaagcgg
gatggggagaacatcctgacgcaggaggccctgcagctccacctcgaggcggccctggcc
gccagcaaagtccaagtctcgctgtacggaaaatcgtgggatttgaataagatctgctac
aagtcgggtgtccccatcattgagaacggcatgatcgagaggatgatagagaagctgttc
ccctgtgtgatcctgacgccgctggactgcttctgggaaggcgccaagctgcagggaggc
tcagcctacctcccgggccgcccggacatccagtggagcaacctggaccctctgcagctg
atggaggagctggggcagttcacatccctggaaggcttcaaagagctgctggacaaggca
gaggtgggacaggcttacatggagcggccctgcctggatcccagggacccccagtgcccg
cccagtgcccccaacaagcagagccagcagagccctgacatcccggccgagctctcaggg
ggctgccacggcttctccaggaagttcatgcgctggcaggaggagctgattttaggcggc
acgaccaaagactcccagggcaagctgctacgcgccgaggccctgcagaccatgttcctc
ctcatgagcccccggcagctctttgagcacttcaaggatgactatgagatccatgacatc
agctggagcgaggagaaggcgggtgccatcctggaggcctggcagaggaaattcgtggag
ctggcgcaggactccatcccgcccaacgccacgcagagtgtccatgctttctccaccacc
acgctcaacgacatcatgaagtccttctccgacgtcagcgccatccgagtggccgggggc
tacctcctcatgctggcctacgcctgcgtcaccatgctgcggtgggactgctccaagtcc
caaggggccgtgggcctggccggggtcctgcttgtggctctctctgtggcctctggcctg
gggctttgctcactgctgggcatctccttcaacgcagccaccacccaggtcctgcccttc
ctggcccttggcattggtgtggacgacatgttcctcttggctcacgccttcaccgagacc
agccagcacatccccttcaaggagcggacgggcgagtgcctgaagcgcacggggaccagt
gtggctctcacctccgtcagcaacatgattgccttcttcatggcagccctggtgcccatc
cctgccctgcgtgccttctccctccaggctgcggtggttgtggtgttcaacttcgccatg
gtgcttttcgtcttccccgccatcctgagcctggacctgcaccgccgggagaaacgtcgg
ctcgacatcctctgctgcttctacagcccttgctcctcgcgggtcatccagatccaaccc
caggagctcgctgacgccaacgacaaccatgcctgccacccctccccttatgggcacccc
agcatggccaccagcacccagatcacaaccaccgtgcaagccttcacccggtgcgacccc
tcgggccaccatgtcgtcaccgtcctgccgcccacctcccaggtgtgcacctcgcccgcc
gtcctgctgccccccaccgaccccctgggctcgcaggtctttgccccatccagctccacc
cgggacctgctggcccagctggatgaggccaagggcgggcgggagtgcgtccccctgccc
ttctgccgctggagcctcgccgacttcgcccgggagaagtacgccccgctccttctgcgg
acccggaccaaggcggtggtagcggtgctgttcctggcgctgctgggactgagcctctac
ggcaccaccatggtgcacgacgggctctacctgacagacatcgtgccacgggacaccaag
gcacacgccttcatctcggcccagttcaagtacttctccttctacaacatgttcatcgtc
accaagggcggcttccactacccgggcgcccaagccgcgctgctcagcctgcaccaggcc
ttcagcaccgtcaagtacgtggtgcgggagggcaaccgtgacctgcccaagatgtggctc
cattacttccaggactggctgcgagggctccaggccaccttcgacagggactggcaagct
gggcgcatcactcatgacagctaccgcaatggctccgaggacggggcgctggcgtacaag
ctcctaatccagaccggcaacaagaaggagcccttcaacttcaatcagctgaccacgcgg
cggctggtggacgagaacggcatcatcccccctgacaccttctacatctgcttgacggtg
tgggccagcaatgaccccctgggcttcgctgcctcccaggccaacttctaccccccgccg
cccgagtggatccatgacaagtacgacaccacgggcgagaacctgcgaatcccggcagcc
cagccactggagtttgcccagttccccttctacctgagcgggctgcgtcgcacggccgac
ttcgtggaggcgatcgagagcgtgcgggccatctgccgggaggccgcccagcgccacggg
gtgctgagctaccccagcggctaccccttcctcttctgggagcagtacatcggcctgcgc
cactggttcctgctggccatcagcatcctgctggcctgcaccttcctcgtctgtgccctg
ctgctgctcaacccctggacggccggcatcatcgtctccatcctggccatgatggcagtg
gagctgtttggcatcatggggctgatgggcatcaagctgagcgccatccccgtggtcatc
ctcatcgcctcggtgggcatcggtgtggagttcactgtccatgtggccttgggtttcctg
acggctgcggggagcaggaacgtgcgctcggccgcagcgctggagcacactttcgcccct
gtgatggacggcgccgtctccaccctcctgggcgtcctcatgttggctggctctgagttt
gacttcatcatgaggtacttctttgccgtgctcaccgtcctgacgctgctggggctgctc
aacgggctggtgctgctgcccgtcctgctctccgtcatcgggccaccccccgaggcatcc
ccagtggataatggcccccgcctgccccctccggaaccggtgcccccatgcctgggcccc
ggtgggctatacgtccgacgtgccccagcctggcctgccgcctttcccgacccctcggac
acggagcgctacgcggagagcgtggggccaggcagtccccggggacccttcatcgtgccc
cctgccccggcacacatcctgctggaggccggcaaggaccccagcttcccccgcatcacc
gtgctgaagccctacaaggacagcccggaggtccaggagaagaaggaggctcctggcccg
cagcccacaccctccctgcccttcggggagccgtgccccgcgctgccccgagactacccg
cagtactgcccactgggtgcccagccagccccccctgcagccctgcctgcctacagcacc
cacctgcagggtcccgctggcagctacaccaccgtcacggccaccgcttcggtgacagtg
gccctgcaccccacgctgcctggctcctaccccaactttggccccgagggcttcgccagt
ggtgagcgggactgcctggaggagcccagcatgcccagcacgggtggcaccgccatgccc
aatgccttcgagatgcagagcattggacgccgtggggcaggcacccagcgttag
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