Calonectris borealis (Cory's shearwater): 142085850
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Entry
142085850 CDS
T11211
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03008
Ribosome biogenesis in eukaryotes
cbor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
142085850 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
142085850 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142085850 (XRN1)
03009 Ribosome biogenesis [BR:
cbor03009
]
142085850 (XRN1)
03016 Transfer RNA biogenesis [BR:
cbor03016
]
142085850 (XRN1)
03036 Chromosome and associated proteins [BR:
cbor03036
]
142085850 (XRN1)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
142085850 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
142085850 (XRN1)
Ribosome biogenesis [BR:
cbor03009
]
Eukaryotic type
Pre-60S particles
RNases
142085850 (XRN1)
Transfer RNA biogenesis [BR:
cbor03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
142085850 (XRN1)
Chromosome and associated proteins [BR:
cbor03036
]
Eukaryotic type
Gene silencing
piRNA pathway
142085850 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
142085850
NCBI-ProteinID:
XP_075014376
LinkDB
All DBs
Position
9:complement(12560479..12605867)
Genome browser
AA seq
1772 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTVYLSGHETPGEGEHK
IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTSHEAHFALLREEVRFGGKKSQRACA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTRLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARKNKQKKQKAQENSICLAALEKNEGEVVTPKTVLEDEPE
DDDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYY
PYHYAPYLSDICNIGELKIKFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMISQDSPI
IEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKCLKEEEKQRNTHSTCLMY
WYDKDAEFQYMSPWPEKFPAIERCHTRYKTIPLDAWHVEITHNKITKINKSALYFCGFPT
LKHIKHKFYLRKSGVQVFQQSSHGENMMLEIIADENSKEQMVENVASSVLGKRVFVNWPH
LEEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAFVGDKEQSMWLKEVQGISEHY
QRRKGIIIHEASIVVYAQLLTGNRYQLNQNGEVYLEKQWSKQVLPFVYQTVVKDIKAFDS
RFSKIKTLDDLFPPGSTAFMLGSPYYGCMGEVQDSRDVITEGRIRVVFNIPCEPQLDPLI
QNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFNYIAKNSQEDIFYEDDIWPGEDE
NGAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTVK
PHLLYRPLEQQNGVVPDGDAEYRLFDRVVNVRDNFSVPVGLRGTIIGIKGASRETDVLFE
VLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSRSEMGSQKLTAIVKPQPAVNNYNSY
ASDLSSVCSQKVHLGGLNHSPRSLFVPTQQLNGRQHYNLRADNQGNSNSPQKGSFLSGNQ
KNKAQSKQDDEFCSIWQSLQSSGKSHHIQQTMHEKGAVLPQEIKLGTGNQFYKPGFNDSS
FKGQQRKQEPYKKFKEDSKVTRGESQPHNKISNKQNFAGVNKYNVKLLKRNECPNMPVIQ
KAAVDDPRTGGKKDNELESLLASLKISKENEVQTYSKEARATNEEHLSPQSFAMKGTQML
KEILKIDGSDLETRNDVKSQVNDVPAPPSRQDCHGAALQYRQTKKMAAYMNKPHSTGGPQ
NTPALETGGHPFACPQPALSTVSELSRICSLVGMSQPDFSFLKTPQTMTVCHIKLSNGLL
VHGPQCHSEAEAKEKAALFALQRLSSIGVNFPLPPPPPPPVFPNYQPLGVPVPPGSIPPV
FAQPPANIMPPTSHMFGPVSWGTPVPKHYYPGSYPGNLSLAGTIPVGSHNQFIPLQVTKK
RAASKKNFEVKEFQSSPQAAPLKNEQPVSSDHIQQDSSSAPLKSPQAAQSTVSFQDNVAT
PSVPHNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq
5319 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtggatctcggagcggtacccctgcctcagccaggtg
ctgaaggagcatcagattccagaattcgacaacttatacttggacatgaatggcattata
catcagtgttcacatccaaatgatgatgatgttcacttcagaatctcagaagataagatt
tttgctgatatttttcactatttggaagtactttttcgcattattaaaccaaggaaggtt
ttcttcatggcagttgatggagtagctccaagagcaaaaatgaatcagcagcgtgggaga
cgttttagatcagcaaaagaggcggaggacaaaataaaaaaggcattagaaaagggagaa
actctccctacagaagccagatttgactccaactgtattacgccaggaactgaattcatg
gccagattgcatgagcatcttaaatattttgtaaatatgaagatttccacagacaaatcc
tggcaaggagtaacagtctacttatcaggccatgagactccgggggaaggtgagcataaa
attatggagttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaagacac
tgcctctatggcttagatgctgacttgattatgctgggattaacaagtcatgaggcacac
tttgcgctcttaagagaagaagtcagatttggtggtaaaaaatctcaaagagcatgtgca
ccagaggaaaccacatttcatttactgcacctatcactgatgagagaatatattgattat
gaattttcaccagtaaaagacaagatttcctttgaatatgatattgaaaggataatagat
gattggatcttaatgggtttccttgtaggaaatgattttattcctcatctacctcattta
cacattaatcatgatgcactgccgctactttatagaacatatatggctatcttgccagaa
ctgggaggctacataaatgaaaacgggcacctgaatttaaaacgctttgagaaatatctc
acaagattgtcagattttgatcgtgaacacttcagtgaagtctttgtagacctaaaatgg
tttgaaagtaaagtaggcaataaatacctcaatgaggcagctggtattgcagcagaggaa
gccagaaaaaataagcaaaagaaacaaaaggctcaggaaaattctatatgtttggctgct
ttagaaaaaaacgaaggtgaagttgtgaccccgaaaactgtgttggaagatgaaccagaa
gatgatgatttgtttgaaactgagtttaggcaatacaaaagaacttactacatgactaaa
atgggtgtagaagtagtttctgatgacttcttggctgatcaagctgaatgttacgtccag
gcaatacaatggattttgcattattattaccatggagttcagtcatggagctggtattat
ccttatcattatgcaccttatctgtcagatatttgcaacatcggcgaactcaaaatcaaa
tttgaactgggaaaacctttcatgccatttgaacagcttcttgctgtacttccagcagct
agcaaagatctgctacctaaatgctaccagcatttgatgatcagtcaagactctcctatt
atagaatattatccaccagattttaaaactgacctaaatggaaaacagcaagaatgggaa
gctgtggtattaatcccgtttattgatgagaaacgactgctgcaggccatggaatcctgt
aataagtgcctaaaagaagaggagaaacaaagaaatactcacagtacttgcttaatgtac
tggtatgacaaagatgcagagttccagtacatgtcaccatggccagagaaattccctgcg
atagaaagatgtcatacgaggtataaaacaatacctttggatgcttggcatgtagaaata
acccacaataagataactaaaatcaacaagagtgcattatatttttgtggatttcctact
ttaaagcacattaaacataagttctatcttagaaaaagtggcgtacaggtgtttcagcaa
agcagccatggagagaacatgatgttagaaatcatagctgacgagaactcaaaagaacag
atggtagaaaatgttgccagttcggtactcggaaagcgtgtttttgttaactggccacac
cttgaagaagcccgagttgttgctgtgtcagacggagaaactaagttttatttggaagaa
ccacatggcacacagaagctttacatgggaaatgcagtgcccccaactaaagtggcattt
gttggagataaggaacaaagcatgtggttaaaagaagttcaaggcatttcagagcattac
cagagaagaaaaggaataattattcatgaagcatcaatagttgtgtatgctcagttactc
actggtaatagatatcaactaaaccaaaatggagaagtttatttggagaagcagtggtca
aaacaagttcttccttttgtttaccaaactgttgtcaaggatatcaaagcctttgactct
cgtttttcaaaaatcaaaactttggatgacttgtttcctcctggaagtacagcctttatg
ctgggatctccttactatggctgcatgggagaagttcaagattcacgtgatgtgatcaca
gaaggtagaattcgtgtagttttcaatattccgtgtgaaccccagcttgatcctttgata
cagaaccagcataaatactctgtgaagtacaatcctgcatatattttagccagccgtctt
ggagtgagtggatatctcgtctccagatttacagggagtatctttattggaagaggatca
aagaaaaatcctcatggagatcacaaagcaaatgtggggctaaacctgaagttcaataag
aaaaatgaagaagttcctggctatactaagaaagttggaaatgaatggatgtattcttct
gcagtagaacaactacttgctgagtatttagaaagagttcctgaactatttaattacata
gccaagaatagccaggaagatatcttctatgaagatgacatttggcctggagaggatgag
aatggagctgagaaagttcaagaaattgttgcctggttaaaggcacatcctgtgtctgca
ttgtctcgctcatcttgtgacttgcaaattttggatgcagccattgttgagaaaattgaa
gaagaaatagagaagtgcaagcagagaaagagcaacaagaaggtgcgagtaactgtgaaa
ccccatttgctgtacagaccgttagaacaacagaatggggttgttccagatggagatgca
gagtataggctgtttgaccgtgttgtcaatgtgagagacaacttttccgttccagttggt
cttcgaggtaccattataggaattaaaggagccagtagagaaacagatgtgctcttcgaa
gttttgtttgatgaagaattccttggaggcctaactataaggtgctcacctgccagaggt
tatcgtctgccatcaagtgccttaattaacctgtctcatggtagtcggtcagaaatggga
agtcaaaaactgacggccatagttaaacctcaaccagctgtgaataactacaattcatat
gcatctgatctgtcatctgtatgctcgcaaaaagtgcatctgggaggcctcaatcattct
cctcgctctctttttgttcctactcaacaactgaatggaagacagcattataatctcagg
gctgataatcagggcaactctaactcaccccagaaaggatcatttctaagtggcaatcag
aagaataaagcacagagtaagcaagatgatgaattctgcagcatatggcaatcattgcag
agttccgggaagtctcaccacattcagcaaaccatgcatgagaagggtgcagttctacct
caggaaatcaagctgggaactggcaatcagttctataagccaggattcaatgacagcagc
tttaaaggtcagcaaagaaaacaggagccatataaaaaatttaaagaagattccaaagtt
acaagaggtgaaagtcagccacataataaaatatcaaacaaacagaattttgcaggtgtg
aataagtacaatgtcaaacttttgaagaggaatgaatgtcccaacatgcctgtaattcag
aaagctgcagttgatgatccccgtacaggtggaaagaaggacaatgaacttgaaagcctt
ctagcttctttgaaaatttccaaagaaaatgaagtgcagacttattccaaggaagcaaga
gctacaaatgaagaacatctgtcaccacagtcatttgctatgaaaggaacacagatgctc
aaagagattttgaagatagatggctctgacctggaaacaaggaatgatgtgaaatcccaa
gttaatgatgttcctgctccccctagtagacaggattgccatggagctgccttgcaatat
agacaaacaaaaaaaatggctgcttatatgaacaagcctcatagcactggaggccctcag
aacacaccagcactggaaactggaggtcacccttttgcttgtccacagcctgcactgtct
actgtttctgaactttctcgtatttgttctcttgttggaatgtctcaaccagatttctct
ttcctaaaaacaccacagaccatgacagtttgtcacataaaattatcaaacggtttgttg
gttcatggaccgcagtgtcattctgaagctgaagcaaaggagaaagctgcactttttgct
ttacagcgtttgagttctataggagtaaacttccctttgcctccacctccgcctccacca
gtgtttccaaattatcaaccactgggagttcctgtaccacctggatctattcctccagta
tttgcacaaccccctgctaatataatgcctccaacatctcacatgtttggtccagtgtcc
tggggaactccagtgcctaaacattattatcctggctcctatccaggaaatctgtctctt
gcaggaactataccagttggttctcacaaccagtttatacctctgcaggtaactaaaaaa
agggctgctagcaagaaaaactttgaggtcaaggagtttcagagttcccctcaagctgca
ccactaaagaatgaacagccagtgtcttctgaccacattcagcaagatagttcttcagct
cctttaaaatctcctcaagctgctcaatccactgtttcatttcaagacaatgtggctact
ccaagcgttcctcataacaaatcaacaccaaacacttccagcaagcgaaagccaagaaag
ctggctgtcaattttggcgcaccaaaatcttcagaataa
DBGET
integrated database retrieval system
