Calonectris borealis (Cory's shearwater): 142087129
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Entry
142087129 CDS
T11211
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142087129 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbor03021
]
142087129 (SF3B3)
03041 Spliceosome [BR:
cbor03041
]
142087129 (SF3B3)
03036 Chromosome and associated proteins [BR:
cbor03036
]
142087129 (SF3B3)
Transcription machinery [BR:
cbor03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
142087129 (SF3B3)
Spliceosome [BR:
cbor03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
142087129 (SF3B3)
Complex B
142087129 (SF3B3)
Complex C
U2 SnRNP specific factors
142087129 (SF3B3)
Chromosome and associated proteins [BR:
cbor03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
142087129 (SF3B3)
TFTC complex
142087129 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
142087129
NCBI-ProteinID:
XP_075017048
LinkDB
All DBs
Position
12:complement(1991628..2021566)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacctgacgttgcagcgtgccactggcatcagctatgctatccatggc
aatttctcaggaacgaaacaacaagaaatcgtcgtttcccggggcaagatcctggagtta
ctccgccccgatcccaacacagggaaggttcacaccctgctgaccgtggaagtgttcgga
gtcattcgctcccttatggcctttaggctgacgggcgggaccaaagactatatcgttgtg
ggcagcgattcgggacgcattgttattctggagtaccagccctcaaagaacgtgtttgag
aagattcatcaggaaacttttggcaagagtggatgtcgcagaatcgttccaggccagtac
ttggctgtagacccaaaaggccgtgctgtcatgatcagtgcgattgaaaagcagaagctg
gtgtatatcttgaacagagatgctgctgctcgtctcaccatttcctccccgctggaagcc
cacaaggccaataccttggtctaccacgtggtaggagtcgatgtggggtttgaaaacccg
atgtttgcttgtctggaaatggattatgaggaagcggacaatgatccaacaggagaagca
gcagcaaacacacagcagacattgacattttatgaactggacttgggtttgaaccacgtt
gttaggaaatacagtgagcccttggaagagcacggcaacttccttattacagttcctggt
ggttctgatgggcctagcggagtgctgatctgttctgaaaactatattacttataaaaac
tttggtgaccagcctgatatcagatgcccaattcccaggagacggaatgacttggatgac
ccagagagaggtatgatttttgtctgctctgctacacataagaccaagtccatgttcttc
tttctggcccagacagagcagggagacatcttcaaaattactctggagactgatgaagac
atggtaacagagattcgactgaagtactttgacactgttcctgtcgctgctgccatgtgc
gtgctgaagacggggtttctctttgtggcatctgaatttggaaaccattacctgtaccag
atagctcacctgggtgatgatgatgaggagccggagttctcttctgccatgcctcttgag
gaaggagatacattcttttttcagccacgacctctcaagaacctggtgctggtggatgag
ttggacagtttgtctcctattctgtgttgtcagatagctgatctggccaatgaagacaca
ccccagttgtatgtggcttgtggtcgcgggccccggtcgtctctgagggttctaagacat
ggacttgaggtatctgaaatggccgtctcagagctgcctggtaaccccaatgctgtatgg
accgtgaggaggcatgttgaagatgaatttgatgcctatatcattgtgtccttcgtaaat
gccacactggtgctgtctatcggagagactgtagaagaagtgactgattctggattcctg
ggtactacgcccaccttgtcctgctctcttcttggtgatgatgctttggtgcaggtttat
ccagatgggatccggcacatccgagcagataagagggtaaatgaatggaagacaccgggg
aagaaaaccattgtaaaatgcgctgtgaaccagagacaagtagtgatagcactgactgga
ggagaactggtttactttgagatggacccgtcaggacagctgaatgagtacacggagaga
aaggagatgtcggccgacgtagtttgcatgagcctggccaatgttccccctggggagcag
cgctcccggttccttgctgttgggctggtggacaacactgtcagaattatttcccttgac
ccttcggattgcttgcagccgctgagcatgcaggccctccctgcacagcccgagtcgctg
tgcattgtggagatgggtggcacagagaagcaggacgagctgggggagaggggctccatt
ggcttcctgtacctgaacattggactgcagaatggtgtgctgctgcgaactgtcttggat
cctgttactggcgatctttctgataccaggaccagataccttggctcacggcctgtgaaa
ctcttccgagtccgaatgcaaggtcaagaggcggtgctggccatgtcaagccgttcctgg
ctcagttattcctatcagtcacgattccacctgactcccctgtcttatgagacactggag
tttgcgtctggttttgcttcggagcagtgcccagagggcattgtagccatctccacaaac
acactgaggattttggcactggagaagctgggggcagtcttcaaccaggttgccttcccg
ttgcagtacacaccccgaaaatttgtcattcacccagaaagcaacaacctgatcatcatt
gagacagaccacaacgcgtacactgaggccaccaaggcacaaaggaagcagcaaatggct
gaggaaatggtggaggctgcgggtgaagatgagagggagttggctgcagagatggctgca
gcctttctgaacgagaaccttcctgagtccatctttggtgctcccaaggctgggaatggg
cagtgggcctctgttatcagggtgatgaaccccatccagggaaatacattagatctggtc
cagctagagcagaacgaagctgccttcagcgtggctgtgtgccggttctccaatactggt
gacgagtggtacgtgctggtgggagttgccaaggacctgattctgaacccacgctcggtt
gctgggggatttgtctacacgtacaagctggtgaatagtggtgagaagctggagtttctg
cacaagacccctgtggaggaggttcctgcagccattgctccattccaaggtagagtctta
attggagttggaaagctgttgcgcgtttacgacctgggcaagaagaaactgcttcggaag
tgtgagaataagcacattgccaactacatctgtgggatccaaaccattgggcacagagta
attgtttcagatgttcaggagagtttcatctgggtgcgctacaaaaggaatgagaaccag
ctcatcatctttgctgatgacacttatccccggtgggtcactacagcaactctcctggat
tatgacactgtggctggagcagacaagtttggcaacatctgcgtggtgagattgcctccc
aacaccaatgatgaggtagatgaggatcctacaggcaacaaagctctctgggacaggggg
cttcttaacggagcatcgcagaaggctgaagtgattatgaattaccacgtgggagagaca
gtgctttccttacagaagaccacactgattccaggaggctctgaatctcttgtctatacc
accttatcgggggggataggaatcttagtcccgttcacttcccatgaggatcacgacttc
ttccagcatgtggaaatgcacttaaggtctgagcaccctcctctttgtggacgagaccac
ctcagtttccgctcctactacttcccggtgaagaatgtgatcgatggggacctgtgtgag
cagttcaactccatggagccgaacaaacagaagaatgtggccgaagagctggaccggacc
ccacccgaggtgtccaagaagctggaagacatccgcacgcgctacgctttctga
DBGET
integrated database retrieval system
