Calonectris borealis (Cory's shearwater): 142088281
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Entry
142088281 CDS
T11211
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142088281 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142088281 (PATL1)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142088281 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
142088281 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
142088281
NCBI-ProteinID:
XP_075019555
LinkDB
All DBs
Position
14:complement(19754489..19765597)
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AA seq
765 aa
AA seq
DB search
MFRYQSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKP
MAARERDGAGGEEVDLLGEPEDTLAERLTRLVIDSELEDPAIMQAVQTRAPAQQPGGLNS
SIWDSSAVLRRIRGPLLTQEMPSVSVLDYALPQRPPQAREEERDPSERALPRRSSSPVIG
SPPVRAVPIGTPPKQAAVPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPASGFRAFFGAPPAPPPSQPQHPPGPGSHLQSLRPQHQMFRPDTTHLHPQHRRLL
HQRQQNRNQHRSLNGSVGDRGGHRSSHQEQMRKDPYANLMLQREKDWVSKIQMMQLQSTD
PYLDDYYYQNYFQKLEKLSAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKL
TVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLL
SLEGERPALMGERKQKICDMYDNLRGKAPGQERPSDDHFMQIMCIRKGKRLVARILPFLS
PEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQS
ATAPAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDANTELMQDNQWTELMLMATREL
LRIPQAALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtaccagtccctggaggactgcccgttggatgaggatgaagacgctttccag
gccctgggggaggaagatgaagatatcgaccagttcaacgatgacaccttcggagccggg
gctgtcgacgacgactggcaggaggcacacgagcggctggcggagctggaggataaaccg
atggcagccagggagcgggatggggccggcggagaggaggtggatctgctgggtgaaccc
gaggatacgctggcggagcggctgaccaggctggttatcgacagcgagctggaggatccc
gccatcatgcaggctgtgcagaccagggcccccgcgcagcagcctggagggttgaattcc
agcatctgggacagctcggctgtcctgaggcgcatccgagggccgcttctcactcaggag
atgccgtcggtgtccgtgctggactacgctctgcctcagagacccccccaggctcgagag
gaagagcgggacccctccgagcgggcgttgccccggcgttcatcatcccctgtcatcggg
agcccccctgtccgggctgtccccatcggcacccctcccaagcaggctgccgtgcccaac
ttcaaccagcagatcctgtgtccgaagcctgtccacatccgagctaccatgcagcagcgc
taccccgctccctacggcgagaggatgtcccccaaccagctctgcaacgtaccgaattcc
tccctcctgggccacccgttcccccacagcgtctctcccgtcctcacccacctgcagaga
gcgcagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtc
tctggcctggttgggagccccctcccctccgtcaatcccaagctgctccagggcagagtc
gggcagatgatgtctccggccagcgggtttcgtgccttcttcggggctccccccgctcca
cctccctcgcagccgcagcacccgccgggccccggatcccacctgcagagcctgaggccg
cagcaccagatgttccggccggatacgacccacctgcacccccagcaccgccggctcctg
caccagcggcagcagaaccgaaaccagcaccggagcctcaacggctcggtgggggaccga
gggggccaccggagcagccaccaggagcagatgcgcaaagatccctacgccaacctcatg
ctgcagcgggagaaggactgggtgtccaagatccagatgatgcagctgcagagcactgat
ccctacctggatgactattactaccagaattacttccagaagctggagaagttgtcagca
gcggaggaagtccacggtgatggtcccaagaaggaacgcactaaactcatcacacctcag
gtggctaagctggagcacacctacaagccagtgcagtttgaaggctcgctcgggaagctc
acggtctccagcgtgaacaacccccggaagatgatcgacgcggtggtgacctcccgcagt
gaggatgacgagacgaaggagaagcaggttcgagacaagaggcgccagacccttgtcacg
atcgagaagacgtacagcctcctcctggacgtggaggactacgagagacgctacctcctg
agcctggaaggcgagcggccggccctgatgggcgagaggaagcagaagatctgcgatatg
tacgacaatctgagggggaaggcgcccgggcaggagaggccaagcgacgaccacttcatg
cagatcatgtgcatccggaaagggaagcgcctcgtggcccggatcctccccttcttgtca
cccgagcaagcggccgacgtactcatggcgacggccaggaacctgcccttcctcatcaag
aaggatgctcaggatgaggtgctgccctgcctgttgaggccattctcacacgttctctac
caccttcccttggggacggtcaccagccttgtgcagcagctaacgaacctacctcagagc
gcgaccgcgccagcacccaccaacctgcacctcactgctgtgctccaaaacaagttcggc
ctgtccctgctgtacttggtcttgagccgcggggaggaactgcagagctcggacgccaac
acggagctaatgcaggacaaccagtggacggagctgatgctcatggcaacgcgggagctc
ctgcggatccctcaggcggctttggccaagccggtgtccatcccctcgaacctgatctcc
ctcttctctcgctacgttgaccagcagaagctgaacctgctggagacgaaattgcactta
gtgcacgggatccggtag
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