Calonectris borealis (Cory's shearwater): 142088296
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Entry
142088296 CDS
T11211
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03420
Nucleotide excision repair
cbor04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
142088296 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
142088296 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cbor04121
]
142088296 (DDB1)
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142088296 (DDB1)
Ubiquitin system [BR:
cbor04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
142088296 (DDB1)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
142088296 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
142088296 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
142088296
NCBI-ProteinID:
XP_075019587
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All DBs
Position
14:complement(19908516..19925550)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtcgtgacggcgcagaagccgacggccgtcaacggctgcgtcacc
gggcatttcacttcggcagaggatttgaacctgctgatcgccaagaatacgcgactggag
atctatgtggtgacagcggaggggctgcggcccgtcaaggaggtggggatgtacggcaag
accgccgtcatggagctcttccgccccaagggggagagcaaggatttgttgttcatcctg
acagccaagtataacgcctgcatcctcgagtacaagcagaatggggacagcattgatatt
ataacccgtgcccatggcaacgtgcaggatcgcatcggtcgtccctcagagaccggcata
attggcatcattgacccagagtgccggatgatcggcctgcggctctatgatggccttttc
aaggtcattcccctggaccgggagaacaaggagttaaaggcttttaacatccgcctggaa
gagctccaagtcatcgatgtgaagttcctctatggctgtcaggctccgaccatctgcttc
gtctaccaggaccctcagggtcgccatgtcaagacgtacgaggtgtcactgcgcgagaag
gagtttaacaaaggtccttggaaacaggagaacgtagaggctgaagcctccatggtcatc
gcagtgccagagccttttggaggcgcgatcatcattgggcaggagtctatcacctatcac
aacggagataaatatctagctatcgctccacctatcatcaagcaaagtacgattgtgtgc
cacaaccgcgtggatcccaatgggtcccgttacttgctgggggacatggaaggacgcctc
ttcatgctgctcctggagaaggaggaacagatggacggcactgtcaccttgaaggacctg
cgcgtggaactgcttggcgagacatccattgcagagtgcttgacctacctggacaatgga
gtggtgttcgtcggttctcggcttggggattcccagcttgtgaagctcaacgtggacagc
aacgagcagggctcctacgtagtggctatggagaccttcaccaacctcggtcccatcgtt
gacatgtgtgtggtagacctggaaagacaaggccaagggcagctggtcacatgctcgggt
gcgtttaaagagggttcactgcggatcatccggaacggcattgggattcatgagcacgcc
agcatcgacttgccagggattaaaggcttgtggcccctgaggtcggactctcatcgtgaa
acggacaatacgttggtgctgtcctttgttggccagaccagggttctgatgttaaatgga
gaggaagtagaagagacggagctcacagggtttgtggatgatcagcagactttcttctgc
ggcaacgtggcacatcagcagttgatccagatcacctctgcctctgtgagactggttagt
caggagcccaaagccctggtgagcgagtggaaagagcccaatggaaagaacatcagcgtg
gcttcctgtaacagtaaccaggtagtggtggctgtgggacgagccctgtactacctggag
atccgaccgcaggagctcaggcagatcagctgcacagaaatggagcatgaagttgcctgc
ctggacatcacccctttgggggacacgaacggcatgtccccgctgtgtgcaatcgggctc
tggactgacatctctgcccgcatcctaaagctgccttcgtttgagctgctgcacaaagag
atgctgggaggagaaattatccctcgctccatcctgatgacgaccttcgagagcagccat
taccttctgtgtgccctgggggacggagctctcttctactttgggctcagcctcgagaca
ggcttgctgagtgaccgaaagaaggtgactcttgggacccagcccaccgtcctgaggact
ttccgctctctgtccaccaccaacgtgtttgcctgctctgaccgtcccaccgtcatctac
agcagtaaccacaagctggtcttctccaatgtcaacctgaaggaggtgaactacatgtgt
cctctcaactcggatgggtatcctgacagcttggcgttggccaataacagcaccctgacg
atcggcaccattgacgagatccagaagctgcacatccgcacggttcccctctatgaatcg
cccaggaagatctgctaccaagaggtatcgcagtgtttcggcgtgctctcaagtcgcatt
gaggtgcaggatgccagtgggggcaccactgctctcagacccagcgccagcacccaggcc
ctctccagcagtgtgagcaccagcaagctgttctccagcagcacagcaccacatgagacg
tccttcggagaggaggtggaggtgcacaacctgctcatcatagatcagcacaccttcgaa
gtgcttcatgctcaccagtttctgcaaaacgagtacgccctcagcctggtctcttgcaag
cttggcaaggatccaaacacctacttcatcgtgggcaccgccatggtatatcccgaggag
gcagagcccaaacagggccgcatcgttgtcttccactactctgacgggaagctgcagagc
ctggctgagaaggaggtcaagggggctgtgtattccatggtggagttcaatgggaagctg
ttagccagcatcaacagcacggtgcgcctgtatgagtggacagcagagaaggagctgcgc
acggagtgcaaccattacaacaacatcatggccctctacctgaagaccaaaggagacttc
atccttgtgggagatctgatgcggtctgtccttctccttgcatacaagcccatggaagga
aacttcgaggagattgcccgagacttcaatccaaactggatgagtgccgtggagatcctg
gacgatgacaacttcttgggagcagagaacgctttcaatttgtttgtgtgccagaaggac
agcgcggccacgaccgatgaggaacgccagcacttgcaggaggtgggactatcccatctg
ggagagttcgtcaatgtcttctgtcacgggtctctggtcatgcagaacctgggtgagacg
tccacgccaacacagggctcggttctcttcggcacagtcaacggcatgattggactggtg
acctcgctgtcggagagctggtacaacctcctcctggacatgcagaacaggctgaataaa
gtcatcaagagcgtgggcaagatcgagcactccttctggagatcatttcacaccgaacgc
aagacagaaccggctacggggttcattgatggtgacctgattgaaagcttcctggacatc
agcaggcccaagatgcaggaggtggtggcaaacttgcagatcgatgacggcagcggcatg
aagagggaggccaccgtagacgacctgataaagatcgtggaggagctgacccggatccat
tag
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integrated database retrieval system
