Calonectris borealis (Cory's shearwater): 142088577
Help
Entry
142088577 CDS
T11211
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
142088577 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cbor01009
]
142088577 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cbor04515
]
142088577 (PCDH1)
Protein phosphatases and associated proteins [BR:
cbor01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
142088577 (PCDH1)
Cell adhesion molecules [BR:
cbor04515
]
Cadherins
Protocadherins
142088577 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_4
K319L-like_PKD
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
142088577
NCBI-ProteinID:
XP_075020108
LinkDB
All DBs
Position
15:3225111..3282861
Genome browser
AA seq
1225 aa
AA seq
DB search
MQTPLDQRARGRHGAQRRPHPTPLQRRMKPLASCLGLWLLFQLPALVCGTRVVYKVQEEQ
PPNTLIGSLASDYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRDCQHLLP
GKPCFLEFEVSITDLILNSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNIGALFP
IPLAMDRDSGPNGVASYELTAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDVNILKFSVMAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKDYTIEIVAVDSGNPPLSS
TNSLKVQVLDVNDNAPVFSQSFTEVAFPENNEPDDLVMEVSASDADSGSNAKLVYSLVTD
PSSKGSFTIDPDSGEIRVKAVLDREQRERYEFLVVAADKGSPSLKGTASVAINVMDRNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILP
HTSPGQQVSKVKAEDIDSGVNAELTYSITGGNPFELFQISPHSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKS
KSKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEI
PLTQTSDFQPATTPSSQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgccgctggatcagcgcgcaaggggccggcacggagcgcagcgccgtccgcat
ccaactcccctgcagcgcaggatgaaaccgctggcatcctgcctgggcctgtggctcctc
ttccagctccctgccctggtctgtgggacgcgtgtggtctacaaagtgcaggaggaacaa
ccccctaacaccctcatagggagcctggcctctgactacggcttcccggacgtggggcac
ctctacaagctggaagtgggggccccgtacctacgtgtagatggcaagactggggacatc
tacaccacagagacctccattgaccgggagagcttgcgtgactgccagcacctcctgccc
gggaagccctgcttcctggagtttgaagtgtccatcactgacctgatcctgaacagcagc
ccacgcctactggagggacagatagaggtgctcgatatcaatgacaacacccccaacttt
gcctcgcccgttctcaccctctccatccccgaaaacaccaacatcggggcgctcttcccc
atccccctggccatggaccgggactcaggccccaacggcgttgcctcctatgagctgacg
gctggaccggaggcgcaggagctctttggactgcaggtcgcggaggatcaggatgagaag
cagcctcagctgatcgtcatggggaacctggaccgggagcagtgggactcctacgatctg
accatcaaggtgcaggacggaggcaacccgccacgggcgagcagcgccctgcttcgcatc
accatcctggacatgaacgacaacgcgcccaagttcgagaaggccctgtacgaggcagag
ctctccgaaaacagccctgtggggcactctgtcctccaggtgaaagccaatgactcggac
cagggcgccaacgccgaaatcgactactccttccaccaagcctcggacatggtgcgccgg
ctgctgcgcctggaccgcgccacggggctcatcaccgtgcaggggcccatcgaccgcgag
gacgtcaacatcctcaagttctctgtcatggccaaggacaagggggccaaccccaagagc
gcccgcacccaggtggtggtcaccatcaaggacatgaacgacaacgcgccctccatagag
atacggggcattgggctcgtgactcaccaggatggcatggcgaacatctcggaggacgtg
ccagtagagacagcagtggctctggtgcaggtgtccgaccgagatgagggtgaaaacgcc
gtggtgacctgcgtggtcgctggtgacgtcccattccagctgcggcaggctagtgaaaca
gggagcgacagcaagaagaaatacttcctgcagaccaccacgccgctggactacgagtcg
gtgaaggattacacgattgagattgtggcggtggactcagggaacccgcccctctccagc
accaactctttgaaggtgcaggtgttggacgtgaatgacaatgcacccgtcttcagccag
agcttcaccgaggtggccttccccgagaacaacgagcccgatgacctggtgatggaggtg
agtgccagcgatgctgacagcggctccaacgccaagctggtttactccctggtgacggac
ccctcctccaagggctccttcaccattgaccccgactctggggagatccgggtgaaggcg
gtgctggaccgagagcagcgggagcgctacgagttcttggtggtagcggcagacaagggc
agccccagcctcaagggcacagcatctgtggccatcaacgtcatggacaggaatgataac
gaccccaagttcatgctgagcggctacaacttctcagtgatggagaacatgccgcccctc
agccctgtgggcatggtgacggtgatcgatgctgacaaaggagaaaatgcccgcatccag
ctgtcggtggagcaagacaatggggattttgtcatccagaatggcactggcaccatcctc
tccagcatctcttttgaccgggagcagcagagcacgtacacgttccgactcaaggcagta
gatggtggggatcctcccaggtctgcctatgtgggggtgaccatcaacgttttggatgag
aatgataatgcccccttcatcacttcaccctccaatgccacctacaaacacatcctgccc
cacaccagccctggccagcaggtgagcaaagttaaggcagaggacattgactctggtgtc
aacgcggagctgacctacagcatcacaggaggcaacccctttgagctcttccagatctcc
ccgcacagtggagacatcaccctggagaaggagatcctgcgcaagcaccatggcctgcac
cgcttggtagtgcgcgtcaacgacaagggcaaaccctcgcggcacggcacggcactggtg
cacttctacgtcaacgagactctggccaaccgcacgttgctggacacgctggtggggcac
agtctagacacaccacttgacatagacatcgctggagaccctgaatatgagcgcagcaag
cagcgaagcaacatcctcttcggagtcatcgccggcatcgtggccgtcaccctggtcatc
gtgctggtcgtcctggtgcgctactgccggcagcgggaggccaaaagcggctaccaggca
ggcaaaaaggagaccaaggacctgtatgcacccaagcaggccagcaaaagcggtaagagc
aagagcaaggtgaagaagagcaagtctccaaagccgcccaagcccacagaggatgaggaa
gagacagggctgcagaaatcactcaagttcaacctcatgaatgactctgtcagtgacagc
ccccgaatccacctgcccctcaactacccgccgggcagcccagacctgggtcgccactac
cgctccaactcaccgctgccctccatccagctgcagcctcagtcgccctctgcctctaag
aagcaccaagtggtgcaggacctgccagccaccaacacctttgttggcaccggggacaac
aactcaacaggatccgagcagtactcggactacagctaccgcaccaacccccagaaatac
accaacaagcagttacctcatcgccgagtgacgttctctgcagccagccaggctcaggac
ctgcaggatccctcccagcacagctattacgacagcgggctggaggagtcagagaccccg
agcagcaaatcatcgtcggggccccgcatcgggccgctagccctgcctgaggatcactac
gaacgcaccacgcccgacggcagcatcggggagatggaacaccctgagaatgatctccgg
cctctgcccgatgtagccatgactgggacgtgtacccgggagtgcacagaattcggccat
tccgatacctgctggatgcccggccagtcctcccccagccgcaggcccaagaacgccctc
aaactctccacttttgtgccttaccaagacagagggagtcaagagcaagtcgggaatggc
agccccagactctcagaagagcgcagcaccaaaatggccaacctccgcctgctccccacg
tacagtgccttctccaatagtagccatgagccctgcaaggactctcccatggaggaaatt
cctctcacccagacctcggacttccagccagccaccaccccctcgtcccagaccaccaag
agggagatatacctgtga
DBGET
integrated database retrieval system
