Calonectris borealis (Cory's shearwater): 142088715
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Entry
142088715 CDS
T11211
Symbol
UIMC1
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142088715 (UIMC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142088715 (UIMC1)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
142088715 (UIMC1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
UIM
Carboxyl_trans
zf-WRNIP1_ubi
Motif
Other DBs
NCBI-GeneID:
142088715
NCBI-ProteinID:
XP_075020438
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Position
15:complement(14567177..14606386)
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AA seq
818 aa
AA seq
DB search
MPRKKKPTEGLDSRGQDGEEEEEEKRNPANAKKKRSFVDAFIVISDSDGEQESKEESGLQ
KKRTKQQLDRTKFAAKRKIAQMTEEEQFALALKMSEQEARQVNCQEEEEEELLRKAIAES
LNSCQPSDSSDATPQLSAEALGARGQSQPAEKEGSEILGGLALCPDTPRSECSSHSQSAR
ADGNGQMDVAWSPLVVLRRLSQEIVESSLVSSIIVSPGKGQPVTRSSEKPSSQEKSDSSN
TLPSTLGDDLVSLSPTFGRVTSGSSRLTPRRLFTSPSRSSEATGHEPKEQPLPCTGHSAG
EAGAGTSATLWKSWTAEQCSSPRRSGGGEGTTHASQPGHAAKVCVSTEQAEQNEVPDSTP
ELCVLNVAEEKHKQEEARDTVHYYWGIPFCPKGVDPNQYTKVILCQLEVYQKSLKQAQRQ
LLHKKEFGNPVVPGSSLSQNELGKGEQISRENGVADDTEDGDPDGQKESESITWLLPSKR
REAESPGHSMEEEKNSTSDDEPTTSYCQIFPFQASQVLPTEDVHEDGEPMQIAESISVLT
PLGSKRSPDIATEKSAEEEISVCPETQPSPLEAIEAERGELCSGSRDAPMQAGGDEDAGR
TVSECSPTAADRVLCPLCDQGFPATEIELHAMYCNGIVGEEAGEDSPVLTRHQREARSKA
ASGESGPTSLGIDKCEKCYLCKSLVPLLQYQRHVDSCLQAARQAQGTRRLRSAKDIGRQE
RGLLRMLELSESKSAGADAGSPLTGLGDQQSPPALSTRAGGPAADSPSSLQHLPFNVSPA
KPSVSEATDCVVDLEPHAALRLGSQQQTKGCRRRKRKF
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggaagaagaagcccacagagggcctggactctcgaggtcaggatggggaggaa
gaggaagaagagaagaggaacccagccaatgccaagaagaagcgcagttttgtggatgcg
tttattgttatatctgacagcgatggagagcaggagtcaaaggaagagagtggattgcaa
aagaagagaacaaaacagcagctggatagaacgaagtttgctgctaaaagaaaaattgca
cagatgactgaagaggaacagtttgcactggccctgaaaatgagtgagcaagaagccaga
caagtgaactgtcaggaagaggaagaggaggagctcttgaggaaggccattgctgagagc
cttaatagctgtcagccctcggactcctctgatgcaacccctcagttgtctgcagaagcg
ctgggtgcgcgaggccaaagccagcccgccgagaaagaaggctctgagatcctgggaggt
ctggcgctttgccctgacacccctcgctccgagtgcagctcccactcacagagcgccaga
gctgatgggaatggacagatggatgtcgcctggagccccctggtagtgttgaggaggtta
agccaggaaatcgttgaaagctcactagtatccagcataattgtgtctccggggaagggc
cagcctgtgacaaggtcaagtgaaaagccttcctcacaagaaaaaagtgattctagtaac
acgttacccagcactctcggagacgacctcgtctctttgagtcccacctttggcagggtg
acttcaggctcctcacgactgacacctcggagactgttcacaagcccctccaggtcttcc
gaagcaacaggccatgaaccaaaagagcagcccctgccctgcactggccattctgcagga
gaagctggtgctgggacctcagccacgctctggaagagctggaccgcagaacagtgtagc
agccctaggaggagtggtggaggagaaggtaccacacacgcctcgcagcctgggcatgct
gccaaagtctgtgtttccacagagcaagcagagcagaacgaggtgcccgacagtacccct
gagctttgcgtgctgaatgtggcggaggagaagcacaaacaggaggaggcgagagacaca
gtgcactattactggggcatccccttctgccccaaaggggtggaccccaaccagtacacc
aaagtcatcttgtgtcagctggaggtttaccagaagagcctgaagcaggctcagaggcag
ctattgcataagaaggagtttggtaacccagttgtgcccggttcttccttgagccaaaat
gagcttgggaaaggagagcagataagcagggagaacggggttgctgatgatacagaagat
ggagacccagacgggcagaaggagtctgaaagcatcacttggctcctcccgtcaaagagg
agggaggcagagagtccagggcacagcatggaagaagagaagaactccacttccgatgat
gaacccaccaccagctactgccagatttttcctttccaggcctcccaggtgctgcctaca
gaggatgtgcatgaagatggggaacccatgcaaattgcagagagcatctccgtgttgacc
ccgcttggcagtaaaaggagcccagatattgccacagaaaaatctgctgaagaagagatc
tctgtttgcccagagacccagccgagtccactggaagctattgaggcggagagaggagag
ctctgctcaggcagcagagatgcacctatgcaggctggtggagatgaagatgctggaagg
actgtatctgagtgcagtcctacagctgctgaccgtgtgttgtgcccgctgtgtgaccaa
ggctttccagctacggagatcgagctgcatgccatgtactgcaacggcatcgtgggagag
gaagctggcgaggacagtccagtcctcacccggcatcagagagaggcaagaagtaaagct
gccagtggtgaaagcggcccaacatctttaggcattgacaagtgtgagaagtgctacctc
tgtaagtcactggtgccactgctgcagtatcagaggcacgtggacagctgccttcaggct
gctaggcaagctcagggaaccaggaggctgcgaagcgccaaggacattggaaggcaggag
aggggactcctcaggatgctggagctctcggagagcaagtctgcaggtgctgatgcgggg
tcccccctcactggactaggagaccaacagtccccgcccgcactctcaaccagagccggg
gggccggcggcggacagccccagctcccttcagcaccttcctttcaacgtttcccctgcg
aaacccagtgtctcggaagccacggactgcgtggtggacttggagccgcacgcggctctt
cgcttgggcagccagcagcagaccaaaggctgccgccggagaaagcgcaagttctga
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