Calonectris borealis (Cory's shearwater): 142088800
Help
Entry
142088800 CDS
T11211
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03440
Homologous recombination
cbor03450
Non-homologous end-joining
cbor04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142088800 (RAD50)
03450 Non-homologous end-joining
142088800 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
142088800 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbor03032
]
142088800 (RAD50)
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142088800 (RAD50)
DNA replication proteins [BR:
cbor03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
142088800 (RAD50)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
142088800 (RAD50)
BRCA1-C complex
142088800 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
142088800 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
DUF2703
NPV_P10
AAA_29
AAA_24
AAA_13
Motif
Other DBs
NCBI-GeneID:
142088800
NCBI-ProteinID:
XP_075020602
LinkDB
All DBs
Position
15:complement(18610294..18633770)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNSFVHDPKVANETDVRAQIRLQFRDVNGELLAVQRSMVCTQKGKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVINNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKEN
VKSIESQLDPLKSSLAAVEQNLIKVMRLDNDIKALESRRRQMEKDNQDLQQKMEKVFQGT
DEQLRDRYQNHQRTVKEKEKRLSDCKRELDRATKECQRFNSEKSELLIERGRLQLQADRH
QEHITTRDSLIQSLAAQLELDGFERAPFNERHITNFHRLLKERQERDTEAANHLMREFAR
KEAMKQKQIDEIRDKKTGLERTIDLKSDIQNKKQVELKNVKYELQQLEGFSDRILELDQD
IVKTEHELEKAERNSNVETLELEVQTLQNEKTNLDKALRKLDQEMEQLNLHTTTITQMDM
LKKDKADKEEQIRKVKSRHSDELTSLLGYFPNKNQLEDWLHDQNKKINQTRDNLAGLNKR
LASVEYHKTYVSNELRKKEEQLSHHEAKLFDVCGSQDFDSDLNKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEENQSCCPVCQRIFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRRTVVELQDRDIPDLRNKIQNANRDLTGLKGEIEEQDSALQTALS
KEESAKARLQDITLMERYQTDIRDVERKIAQQEAKLLGVDLSRTVLQVSKEKQEKKHLWD
TVTGKIELNQKLKQDQQNQIQQLKSTVNELKAEKLQISSSMQRRRQLEEQTVELTTEFQS
LCREIKEAKEQVFPLDATLEKLQQEKEDLMNKRTLSNKETQEKINGIKEKVKDINKYVKE
IENYIQQGKDDYKKQKESELEEVNSQLAACEKRKEMISKEMEMIRQDIDTQKIQERWLED
NLTLRKRNEELKEVEDNVKHLVKEMGEMKVPQMKNEQKHLEEKIESLKRNHHVALGRQRG
FEEEIVRFKKELRESQFRDAEEKYRDMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagattgagaaaatgagtattcttggagtgaggagttttggggtagaggataaa
gacaaacaaattatcactttctttaatccgttaactattttagtgggaccaaatggtgca
ggaaaaacgactatcattgaatgtcttaaatatatatccactggagattttcctcctggc
accaaaggaaactcatttgttcacgatccaaaggttgccaatgaaacagatgttagagct
cagattcgattgcagtttcgagatgtaaacggagagctcttagctgtccagcgatccatg
gtctgtacccagaaaggcaagaaaacagaatttaaaacacttgaaggtgtcattactaga
acaaagcatggtgagaaggtcagtctgagttccaagtgtgcagaaattgatcgagagatg
atcagcgcccttggtgtttccaaatcggtgattaacaatgtcattttctgccaccaagaa
gaatccaactggccattaagtgaagggaaggccctgaaacaaaaatttgatgagatcttt
tcagcaacaaggtatattaaagcactggaaactctccgtcaggtacgactgaaacaaagc
ttgaaagtaaaagagtgtcagacagaactgaaatacctaaaacagaataaagaaaaagca
caggagatccaggatcatcttagcaatagagaagctcagctggctgcttctaaggagaat
gtaaaatctattgagagtcaacttgatcctctaaagagttctctggcagccgttgaacag
aatctcataaaagtaatgaggctagacaacgacataaaagcgctggagagcaggaggagg
cagatggagaaagataatcaagatctgcaacagaagatggaaaaggtttttcaaggaaca
gatgaacaactaagagatagataccagaaccaccagagaacagtgaaggagaaggagaag
agattatcagactgtaagcgtgaattagatagagccactaaagaatgccagagatttaac
agtgagaaatcagaactacttattgaacgaggtcgtcttcaactacaagcagatcgtcac
caagaacacatcacaacgagggattcattaattcagtctttggcagcacagctggaatta
gatggttttgagcgagcaccttttaatgaaaggcacattaccaatttccataggttgttg
aaggagagacaggaaagagatacagaagctgcaaatcatttgatgagagaatttgcacga
aaagaagcaatgaaacaaaaacagatagatgaaataagagacaagaaaactggtttagaa
agaaccattgacctgaaatcagacattcaaaataagaaacaagttgagctgaagaatgta
aaatacgaattgcagcagttggaggggttttcagacagaattctggagttggatcaggac
attgtcaagacagaacatgagcttgagaaggctgagaggaacagcaatgtagaaacactc
gaactggaagttcaaactctacaaaatgagaaaacaaacctggacaaagctcttaggaag
ttggatcaagaaatggaacagttgaatctacataccacgacaattacccaaatggacatg
ctgaagaaagacaaagcagacaaagaggagcagattagaaaagtaaaatcaagacattct
gatgaactgacatcactgttgggatactttccgaataaaaaccaacttgaagactggctt
catgatcaaaataaaaagattaatcagacaagggataatcttgctggccttaacaaacga
ctcgcatctgtagagtatcataaaacttatgtcagtaacgagctaagaaaaaaagaagag
caattgtcccatcatgaagcaaaactttttgatgtttgtggaagccaagattttgacagt
gatctgaacaaacttcaagatgaaattgaaaaaagttcaaaacagcgagctgtgcttgct
ggagcgactgcagtttattcacagttcattacacaattgacagaggagaaccagtcatgt
tgtccagtttgtcaaagaatttttcaaacagaggccgaactgcaagatgtaattagtgat
ctgcagtctaagctgcgtcttgctccagacaaactgaagtcaacagagtctgagcttaaa
agaaaagagaaaaaacgtgatgaaatgatgagtcttaaaccacttcggcgaaccgtagtt
gaactccaagatagggacataccagacttgaggaacaagatacagaatgcaaacagggat
ttaacaggcctgaagggtgagatagaagaacaggattcagccttgcagacagctttgtct
aaggaggaaagtgccaaggcgcgtttacaggatataacactaatggaaaggtaccagact
gatattagggatgttgaacgaaaaattgctcagcaggaggctaagctgctaggggtcgat
ttaagtagaactgttctacaagtaagcaaagaaaaacaagagaaaaaacacttgtgggat
acagttactggtaaaattgagttaaatcaaaagctcaagcaagaccagcaaaatcagatt
cagcagctaaagagtacagttaatgagcttaaagcagagaaacttcagatttccagcagc
atgcagcgtcgtcgacaactggaggagcaaacagtggaattaactactgagtttcagtcc
ttatgcagggagatcaaggaagcaaaagaacaggtatttcctttggatgcaactttagaa
aaactgcagcaggagaaggaggatctaatgaataaaaggactctaagtaataaagaaaca
caagagaagataaatggcataaaagagaaagtcaaagatataaacaagtatgtgaaagaa
attgaaaactatattcaacaaggaaaagacgactataaaaagcaaaaggagtctgaactt
gaagaagtaaattctcagttagctgcctgtgagaaacggaaggaaatgataagtaaagag
atggaaatgattcgacaagatattgacactcaaaagatacaggaaaggtggctagaggat
aatcttactttgaggaaacggaatgaagagctaaaagaagttgaagacaatgtaaaacac
cttgtgaaggagatgggagaaatgaaagtcccgcaaatgaaaaatgaacaaaaacattta
gaggagaaaatagaatctctgaaaagaaaccatcatgttgctcttggccgacaacgtgga
tttgaggaagagattgttcggtttaaaaaggaacttcgagagtcacaattcagagatgca
gaggaaaaatacagggatatgatgatcgttatgagaacaacagagctggtgaataaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcatgaagatg
gaagaaatcaacaaaataattcgtgacctttggcgaagcacctacagaggacaagatatt
gaatatatagaaattcgttctgatgcagatgagaatgtctcggcctctgataaaagaaga
agttacaattacagagtggtaatgataaagggagatacagcattggatatgcgaggaaga
tgtagtgctgggcaaaaggtgcttgcttctcttattattcgtcttgctctagcagaaaca
ttctgtctcaactgtggcatattggcactagatgagcctactaccaatcttgatcgagaa
aacatagagtctcttgcacatgccctggtggagataataaaaagccgctcacaacagcgt
aactttcagcttctggtgataactcacgatgaagattttgttgaacttctgggtcgttct
gaatacgtggaaacattctacaggataaagaagaacattgaccagtgctctgagatcatg
aaatgcagtgtcagctccctaggctcatacgttcattag
DBGET
integrated database retrieval system
