Calonectris borealis (Cory's shearwater): 142089047
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Entry
142089047 CDS
T11211
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
142089047 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cbor01001
]
142089047 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cbor04054
]
142089047 (CIITA)
Enzymes [BR:
cbor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
142089047 (CIITA)
Protein kinases [BR:
cbor01001
]
Serine/threonine kinases: Other
TAF1 family
142089047 (CIITA)
Pattern recognition receptors [BR:
cbor04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
142089047 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_9
LRR_14
NB-ARC
nSTAND_NTPase5
NPHP3_N
RsgA_GTPase
nSTAND3
AAA_16
AAA_19
Motif
Other DBs
NCBI-GeneID:
142089047
NCBI-ProteinID:
XP_075021058
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All DBs
Position
16:5605846..5636104
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AA seq
1134 aa
AA seq
DB search
MQRFCHDYKAMESNTPLHRQDSKRQIMDSAFVSENGYLDLLHSDIDPLHLYTLLDPKSSG
NEEGDFSADSEVDASSYDQFNNMDFLCTMENGENGDELYLCSNTIEAYARIAELAEYVLK
DQQEKQVEDTFAGNLILDEVAAENTEKFTDIKMQRCHKRTFLGSAESCSDASEPKYKKNV
EVPAASAGNGSFLAMPLDSHPASSTSLTNQHLSFSVPATNMLERSFVIPGSSAPLIPECL
PVGVKGSQENTGFEDPPQQILNFVLGNGTSDVIIYPVLPSSMETLISPSFTVSLCGLEMF
KEVRVPIIPSEEPFKRPKPVESFSATLMDYFRDVCKSVAMEREVTLDLLFIDGTLVQSQT
ETKTGKNSVKAMEKELVPCSLQGKEKATLKRSQIFQILGCKDLETKVIVVLGKAGMGKSI
LVQKICQDWSNGEFSQFEFVFWFDCKQISLPEKRYSLKYLLLEFFVKPQEGSKEIFEYIL
QNPAKVLLVFDGFEGLHDHENFPRCSASQPEKDLCSIKELLSGLIQKKILNGCTLLLTAR
PKDKVYQYVSKVDKTIEIVGFSPQQRELYITKYFEGLPYCDNALKLIKECEYLFSHCYSP
VMCRFVCFLCETVLEIGDKSLPSTLTAVFLKFVQQKIIPMQTDVTAMQNQESLATLARIA
WYLGEKHQSAMKSDLLPSKEVKEFALKYGFFLPFAFPRHSDSGEEEFGSTFSDFVIQNFL
GALHLMLAEEIKDKSLTKYLSFPSKKKKTCNWLDLVPRFLAGLLFLQDDPYFCSLSNKDV
KQSTKKQKTLLKYIRRLQINELCPERLLELLHCIYETQSNYLLQHVALRLKPDLSFLGAV
LTPPDIHVLHSILKRSRKEFSLDLRNSSIDMQGLEDLVGLKNVASFRASLSDTVRLWKSL
EQTKDYKLLRASTEKFVLDPFKAKTMKDVSDLSDLVEMQEKMINCVQDASGCSSYEIPAI
KNLRKLEFALGPVCGLQGFLKLVEILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTL
TSLETLNLSQNKITDVGAEKLATALPCLSSLKTLSLYNNSICDFGAENLAKVLPAMASLR
VLDVQYNKITGVGAQQLTDSLRKCPHIKNLVMWNPTIPYGVLEHLQQLDSRVTV
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcttttgtcatgactataaagccatggaaagtaacacaccactccatcggcaa
gacagcaagagacaaatcatggattcagcatttgtgtctgaaaatggctatcttgatttg
ctgcacagtgatattgatccattgcatctgtatactctccttgatcctaagtcatctgga
aatgaagaaggtgacttctctgcagattctgaagttgatgccagcagctatgatcagttc
aataatatggatttcctgtgtacaatggaaaatggtgaaaatggggatgaactgtatctc
tgttccaacaccatagaagcttatgctagaatagctgaattagcagaatatgtgctcaaa
gatcagcaggagaagcaggtggaagacacttttgcagggaaccttattctggatgaagtg
gctgctgaaaacactgagaaatttactgacataaagatgcagagatgtcacaaacgaacc
ttcttaggctctgcagagagttgctctgatgcttcagaacccaaatacaagaaaaatgtg
gaagtccctgcagcgtctgcaggaaatggcagtttcttagctatgcctctcgacagccat
ccagctagctccacctcacttactaaccagcacttgtccttttctgttccggctaccaat
atgttggaaagaagtttcgtaattcctggatcttcagcacctttgattccagagtgtcta
cctgttggcgtgaaagggagccaagagaatacaggctttgaagatcctcctcagcagata
cttaactttgttcttggaaatggcacatctgatgttataatatatccagtgctgccttct
tccatggaaacattgatatccccaagttttacagttagtttatgtggtttagaaatgttc
aaagaagtccgagttcccataattccttctgaagaacctttcaaaagaccaaagccagtg
gaaagtttctctgcaacacttatggattatttccgagatgtgtgcaaatctgtggccatg
gagcgtgaagtaactcttgatctcctgtttattgatgggacacttgttcaaagccaaact
gaaaccaagactgggaagaatagtgtaaaagcaatggaaaaggagctggtaccttgcagt
ctgcaagggaaggaaaaggcaacccttaaaagaagccaaatatttcaaatcctgggatgt
aaagacttagagactaaagtgattgtggtgctgggaaaagcagggatgggcaaaagcatt
cttgttcagaagatctgccaggactggtccaatggagagttttctcaatttgaatttgta
ttttggtttgactgcaaacaaataagcttgcctgagaagcgatacagcctgaagtacctg
cttcttgaattttttgtaaaacctcaagagggaagcaaagagatctttgagtatattttg
caaaatcctgctaaagtccttctggtttttgatggttttgaagggttgcacgatcatgag
aattttcctcgttgctcggccagccagcctgaaaaagacttgtgcagtataaaggagctg
ctttcaggactcatccaaaaaaagatactcaatggttgtactttattacttacagcaaga
ccaaaagacaaggtgtaccagtatgtgtccaaagtggataagactattgaaatagtagga
ttttcccctcagcagagagaattgtacataaccaaatattttgaaggattaccctactgt
gataatgcactgaaattaatcaaagagtgtgagtacttgttcagtcattgttacagccct
gttatgtgtagatttgtttgttttctctgtgagacagtacttgaaataggagacaaaagc
cttccttcaactcttactgcagtcttcctgaaatttgttcagcaaaagataatacctatg
caaacagatgttacagccatgcaaaatcaagagagtcttgctacgctagcccgtatagcc
tggtatcttggagaaaagcaccaaagtgccatgaaaagtgatcttcttccttctaaggaa
gttaaagagtttgctctgaaatatggatttttcctgccatttgcattccccagacattca
gatagcggagaagaggaatttgggagcacattctctgattttgtcattcagaatttcttg
ggtgcgcttcaccttatgttagcagaagagatcaaggataaaagtctaacaaagtacctg
tcttttccatccaagaagaaaaaaacttgtaactggttagatttagtgcctcgatttttg
gctggattattgttcctccaggatgacccctacttctgctccctttcgaataaggatgta
aaacaatcaaccaagaagcagaaaacacttttgaaatatattaggaggctgcagataaat
gagctctgtccggagaggttactggagcttttacattgtatttatgaaacacaaagcaat
tatcttttgcagcatgtggccttaaggctcaagccagacctgtcttttctgggcgcagtt
cttacaccacctgatatccatgtactgcattctattttaaaaaggtcaagaaaagagttt
tccttggatttgcgaaacagcagcattgacatgcaagggctagaagacttggttggccta
aagaatgtggcatcgttcagggcctctctcagtgatacagtcaggctctggaagtcttta
gaacaaacaaaagactacaaactgctgagagcatcaacagagaaatttgttcttgatccc
tttaaggcaaagacaatgaaggacgtcagtgacctttcagaccttgtagagatgcaggag
aagatgattaattgtgtgcaagatgcatctggttgcagcagctatgaaattcctgccatc
aaaaacctcagaaaactagaatttgctctgggtccagtatgtggcctacagggattccta
aagctcgtggaaattcttgccgcgtttccatcacttcagcatttagaccttgatgctctg
agtgaaaatggcataggagatgaaggagcaaagagtctatctgaagtctttccaaccctg
acatcactggaaacattaaacttatcacagaataagataacagatgtgggtgcagagaaa
ctagctacagctcttccttgcttgtcttcattaaagacactaagcttatacaataatagc
atttgtgattttggagcagaaaatcttgcgaaagttcttcctgcgatggcatctttaaga
gtgctagatgttcagtataacaaaataactggtgttggagcccagcagctgactgacagc
ctacgaaaatgtccccatataaagaacttggtgatgtggaatcccaccattccctatgga
gttcttgaacaccttcagcagctggactctagggtcactgtgtag
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