Calonectris borealis (Cory's shearwater): 142089254
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Entry
142089254 CDS
T11211
Symbol
CACNA1H
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04010
MAPK signaling pathway
cbor04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
142089254 (CACNA1H)
04020 Calcium signaling pathway
142089254 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cbor04040
]
142089254 (CACNA1H)
Ion channels [BR:
cbor04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
142089254 (CACNA1H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF3043
Motif
Other DBs
NCBI-GeneID:
142089254
NCBI-ProteinID:
XP_075021582
LinkDB
All DBs
Position
16:complement(15197136..15454019)
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AA seq
2485 aa
AA seq
DB search
MTDGESREPLPRPAGGEVRVPIAAPPRRAAEQPPEDAGSGPGGSPGRDPPPDLASEEEEQ
VPYPALAPTAFFCLKQTTRPRSWCLRLVCNPWFEHVSMLVILLNCVTLGMFQPCEDVECQ
SERCTILEAFDDFIFAFFAVEMVIKMVALGIFGQKCYLGDTWNRLDFFIVMAGMMEYSLD
GHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGV
QLWAGLLRNRCFLDRNFAMTYNLTFLHPYYRTDEAEENPFICSSHRENGMQKCSNIPNRK
EYKVECTLSMDSYTPSLYNPDFSSRNACINWNQYYNVCMAGDINPHNGAINFDNIGYAWI
AIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRE
NQLMQEQRARYLSNDSTIASFSEPGSCYEELLKYICHIFRKVKRRTIRLYNNWQSKRRKK
VNPNSTTNGQSHRGKKRITSIHHLIHHHHHHHHHHYHISNGSPRGPRSNPEICNLELKVM
KPGGQLMLPSPSPNLQSPAPPPDSESVHSIYHADCHVEGPQVNCKSSNAPASIKLTAGLS
NHSNMNYPTILPSPTSKASSVPVPKGKKNGNSPVAVVNSPVNLGTDSYGKLQQLVGEHGL
RRTPSRLSGLSAAGTLPSPPGGTLTCELQDCPFCASLLEDPEFAFSESDSCDSDSNGVYE
FTQDLRHGDHRDQLQQQRGRRRRKKKKPKERNKVTRLWKAFGSKLKRIVESKYFNRGIMI
AILINTLSMGIEYHEQPDELTNALEISNIVFTSMFALEMLLKLLAFGLFGYIKNPYNIFD
GIIVVISVWEIIGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCML
LMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLY
NGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSDTDEDKTSANFDDD
FEKLKDLRATEMKMYSLAVTPNGHLEGRGSMPPPIIMRTAATPMPTPKCSPHMDSVHTFV
DSRRGSNASLDPLSYDQKSLSSLRSSPCANWGTSSNWGSRRSSWNSLGRAPSLKKKNQSG
ERESLLSGEGKGSTDDDSDDAKSSTVSRPSLHRRAESLDYRSSLDLPELLQLPTMRHSLS
ISPMAVLPAEYQDCNGKMVHVPSEFFLRVDSHKEDAMDYEDDMEDSYCYRIRKVLEPYKP
QWCKSHEDWSLYLFSPQNRFRVMCQKVIAHKMFDHVVLVFIFLNCITIALERPDIDPHST
ERIFLSVSNYIFTAIFVAEMMVKVVALGFFSGENTYLQSSWNVLDGVLVFVSIIDIIVSM
ASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFII
FGILGVQLFKGKFYYCDGPDVKNITTKTDCANARYKWVRRKYNFDNLGQALMSLFVLSSK
DGWVNIMYDGLDAVGIDQQPIQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQ
HQEAEEARRREEKRLRRLEKKRRSKEIYLSEAQRRPYYADYSPARKYIHTLCTSHYLDLF
ITFIIGVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAVLKLVAFGFRRFFKDRWN
QLDLAIVLLSIVGITLEEIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTV
VQALPQVGNLGLLFMLLFFIYAALGVELFGKLDCSEENPCEGLSRHATFTNFGMAFLTLF
RVSTGDNWNGIMKDTLRECTREDKHCLSYLPVISPVYFVTFVLIAQFVLVNVVVAVLMKH
LEESNKEAKEDAEMDAEIELEMSRGATTSATSGSRGGAVAPESRAPYRSQESMKSESAVQ
EALSCENVSLAIPDSDTLEGAEAPMMEIPSFRSVSHHVLTPSHKTPGHEAEGGAASLRPQ
DSQNLLTVRKISVSRMHSLPNDSYMFRPVMPAKAPFPLHEVEMETYPCKSQRGSITSIRS
QPVGTCSSLRVPAESLQLAVRSPNQEGRHRWKILPPHITPRSPTLNKLLCRQEAIQTDSV
DGQTPDRKDSLQAEPGETLPSAKQPQSTFTPSPLHPTAASLPGTPPRSPPSSPHRHPGTL
TRKHACGQHGVPSRPPTPGGSPPNPEGCLFESSDLADEEVRHINSSAKDWGGEHSDAGSR
STSPFISPAPSPVPLKNCSTTSLSGGSSKEKDLKKFYSIDAKGFLNKPSWADDQRRHSIE
ICPSVSDGDCRFEDPAEEKQRSPAHTQTESEYIHGARRKKKMSPPCISIDPPMEDDGGAA
SRTKPSENSMLRRRTPSCEFPAYRESLELAESQPGEPASKAERRGQPPCRGEHLTIPNFS
FEQSDGSSLSSLSDLLLDSGQSTPASVDSRPDPAASELKKPDHLKTQWSNSEKSKELLGI
AKSPLRKQDLVPVTVATEEDIDDPV
NT seq
7458 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgagagccgagagccgctgccgcgcccggccggcggcgaggtgcgggtg
cccatcgccgcgccgccccgccgagcagccgagcagccgccggaggatgccggctccggc
cccggcggctcccccggccgcgacccgccgcccgacctggcctccgaggaggaggagcag
gtgccttacccggcgctggcacccaccgccttcttctgcctcaagcaaaccacccgcccg
cgcagctggtgcctcaggctggtctgtaacccctggtttgagcacgtcagcatgctggtc
atcctcctgaactgcgtcaccctgggcatgttccagccctgcgaggacgtggagtgccag
tcggagcggtgcaccatcctggaggcatttgacgacttcattttcgctttctttgcggtg
gagatggtcatcaagatggtggctctggggatcttcgggcagaagtgttaccttggagat
acgtggaatcgcctggacttcttcatcgtgatggcgggcatgatggagtattctctggac
ggacacaacgtgagcttgtctgcgatccgcaccgtccgggtacttcggccgctacgagcc
attaacagggtcccaagtatgcgaatactcgtcaccctgctgttagatactctgcctatg
ttaggcaacgtcctcctcttgtgcttctttgtcttcttcatctttgggattgtcggtgtg
cagctctgggcagggctgctgagaaacagatgtttcctagacaggaattttgcaatgaca
tacaaccttaccttcctgcatccgtactaccggacagacgaagcagaggagaatccattc
atctgctcatcgcatcgtgaaaacggcatgcagaaatgctccaacatcccaaataggaag
gaatacaaggtggagtgcaccctgagcatggactcctacaccccaagtttatacaaccct
gacttcagcagcaggaacgcctgcataaactggaaccagtattacaacgtatgcatggca
ggggacataaatccacacaatggagctatcaattttgataacattggatatgcctggata
gctatttttcaggttataaccctggaaggatgggttgacatcatgtattatgtgatggat
gcacattctttttacaattttatatattttatattgcttataatagttggttccttcttc
atgattaacttgtgcctggttgtgatagcaacacagttttctgaaacaaagcagcgggag
aaccagctgatgcaggagcagcgggcccgttatctctccaacgacagcacaattgccagc
ttctcagagccaggtagctgctatgaggagctgctcaaatatatctgccacatcttcagg
aaggtgaaacggcggacaatacgcctgtacaataactggcagagtaagcgccggaaaaaa
gttaacccaaacagcaccacaaacgggcaaagccaccgaggcaaaaagcgcatcacctcc
atacaccacctcatccaccatcaccaccaccaccaccaccaccactatcacatcagcaat
gggagccctcgggggccacgctccaaccctgagatctgcaacctggaactcaaggtcatg
aaacctggaggccaattgatgcttccttctccatcacccaacttgcagagccctgctcct
cctccagattcggagtctgtgcacagcatttaccatgcagactgtcatgttgaaggacca
caagtgaactgtaagtcttccaatgcccctgcaagcattaaactgactgctggactctcc
aaccatagcaacatgaactatcctaccatcctgccttctccaactagcaaagccagttct
gttccggttcccaaaggaaagaagaatggcaattcacctgtggccgtggttaatagccct
gtaaatttgggcacggattcttatgggaagctgcagcaactggtaggagaacatggtctg
cggcggacgcccagccggctgtcggggctgagcgcggccggcacgctgcccagcccgccg
ggcggcacgctgacctgcgagctgcaggactgtcccttctgcgccagccttctggaagac
cctgagtttgccttcagtgagtccgacagctgcgactccgacagcaatggcgtctacgag
ttcacccaggacctgcggcacggtgaccacagagaccagctccagcagcagcggggcagg
aggaggaggaagaagaaaaaacccaaggagaggaataaggtcacccgcctgtggaaggct
ttcggcagcaagctgaagaggatcgtggagagcaagtacttcaaccgggggattatgata
gccattctcatcaacacgctgagcatgggcatcgagtaccacgagcagccggacgagttg
accaacgccttggagatcagtaacattgtcttcacaagcatgtttgccctggagatgctc
ctgaaactccttgccttcggcctcttcggctacatcaagaacccgtacaacatctttgac
gggatcatagttgtcatcagtgtctgggagatcattggccagtcggacggaggcctctcg
gtgctacgaacttttcggctgctgcgggtgctgaaactggtacgtttcatgcctgccctc
cgtcgccagctggtggttttgatgaagacaatggacaatgtagccaccttctgcatgttg
ctcatgctcttcatctttatcttcagcattctcggaatgcatctttttggatgcaagttc
agcctgaaaactgatacgggagacacagttccagatagaaagaattttgattccttactt
tgggccattgtgaccgtatttcagatcctcactcaagaggactggaacgtggtactgtac
aatgggatggcatctacatcatcatgggcagcactctactttgtggccctgatgaccttc
ggcaattatgtgctcttcaaccttcttgttgccattttggtggaaggcttccaggcagag
ggtgatgccaataggtcagacacagatgaggacaagacatctgccaacttcgatgatgac
tttgagaagctaaaagacctccgagcaacagagatgaagatgtactcccttgccgtcacc
ccaaatggacacctggagggcaggggaagcatgccacctcctataatcatgcgcactgct
gccacaccaatgcccacaccgaagtgttccccacacatggattcagtgcacacttttgtg
gactcgaggagagggagtaacgcttcgctagaccccttgagctatgatcagaagtccttg
tccagcctccgcagttccccttgcgccaactggggcaccagcagcaactggggaagccga
cgctcaagctggaatagcctgggcagagccccgagccttaagaagaagaaccagtcagga
gaaagagagtccttgctctccggggaggggaaaggcagcacagacgatgactccgatgac
gccaagtccagcacggtcagcaggccctcgttgcaccgccgggcagagtccctggactac
cgcagctccctggacctgcctgagctgctccagttgcccaccatgcgccactcgctcagt
atcagccccatggccgttctgcctgccgagtaccaagactgcaatggcaagatggttcac
gtccccagcgagtttttcctgcgtgtcgacagccacaaggaggatgccatggactatgag
gatgacatggaggatagttactgctaccgaattcgtaaagtcctggagccctacaaacca
cagtggtgcaagagtcatgaagactggtccctctacttgttttccccacagaaccggttc
cgagtgatgtgccagaaggtcattgcccacaaaatgtttgatcacgtggtgcttgtcttc
atatttctcaactgcatcactatagcactggagcgaccagacatagacccacacagcacg
gaaaggatattcctaagtgtttctaattacatcttcactgcaatctttgtggctgaaatg
atggttaaggtggtagctcttggctttttttctggggagaacacgtatctgcagagcagc
tggaacgtcctggatggagtcctggtctttgtatctatcattgacataattgtctccatg
gcgtcggcgggtggagctaagatcctgggtgtccttcgtgttttgaggcttctgcggacc
ttgagacctctccgagtaatcagcagagccccaggtctgaagctggtggtagaaaccttg
atctcctccttgaggcctattgggaatattgttctcatctgctgtgctttcttcattatc
ttcgggattttaggggtccagctttttaaaggcaagttctactactgtgatggtcctgat
gtaaaaaacatcactacgaagactgactgcgctaacgcacgttacaaatgggttcggcgg
aagtacaattttgacaatttgggacaggccctcatgtccttgtttgtcctttcctccaaa
gatggctgggtgaacatcatgtacgatggtttggatgccgtgggtattgaccaacagccc
atccagaaccataacccttggatgcttctctacttcatctccttcctgctcatcgtcagc
ttcttcgtgctcaacatgttcgtgggggtggtggtggagaactttcacaagtgccgacag
caccaggaggcggaggaggcccggcgtcgggaggagaagcggctgagacgcttggagaaa
aagcgcaggagtaaggagatatacctgtctgaagcccaacgcagaccttactatgctgac
tattccccagcgcggaagtacattcacaccctctgcaccagccactatcttgacctcttc
atcacgttcatcattggggtcaatgtcatcactatgtcaatggagcactacaaccagcca
aagtccctggatgaagccctgaagtactgcaactatgtgttcaccatagtttttgtgttc
gaggcagtgctgaagttggtggcatttggttttcggaggttctttaaggacaggtggaat
cagctggatttggccatagttctcttatcaattgtgggaatcacgctggaagaaattgag
atgaatgctgcattgcccatcaatcccacaataatacgcatcatgcgggtgctgagaata
gcaagagtgctgaaactgcttaaaatggccaccgggatgcgagctctcctggacacagtg
gtacaagcgcttccccaggtagggaaccttggcctactttttatgctcctgttttttatc
tatgctgccctgggagtggaactgtttggcaagctggactgcagtgaagaaaatccttgt
gaaggtctgagccggcacgcgactttcaccaactttggcatggcctttctcaccctcttc
agggtgtcaacgggggacaactggaatggtatcatgaaggacactctccgggaatgcact
cgggaagacaagcactgcctcagttacctgcccgttatctcccctgtctacttcgtcacc
ttcgtcctcatcgcacagttcgtcctagtcaacgtagtggtggcagtgctgatgaagcac
ttggaggagagcaacaaggaggccaaggaggatgctgagatggatgctgagatcgagttg
gagatgtccagaggagcaaccacctcggccaccagtgggagcaggggaggtgcagtggcc
ccagagagcagggcaccctacagaagtcaggagagcatgaagtcagagtcagcggtgcag
gaggcgctgagctgtgagaatgtgtctttagccatcccagactcagacacgctggagggg
gcagaggctcccatgatggaaatcccgtccttccgctctgtttcccaccatgtcctgaca
ccttcccacaaaaccccaggccacgaggctgagggcggcgcagcctctctgaggccacag
gactctcaaaacctgctgacggtccgcaagatctccgtttcccgtatgcactccttgccc
aacgacagctacatgttccggccggtgatgccagcgaaagcccctttccccctccacgag
gtggagatggaaacgtacccctgcaaatcccaaagagggtccatcacctccatccgctcc
cagcccgtgggaacgtgttcctctctgagagtcccagcggagtccctgcagctggcagtc
cgttctcccaaccaggaaggccgtcaccgctggaagatccttcccccccacatcacgccg
cgatctcctactctcaacaagctgctgtgcagacaggaggccattcaaacagattccgtg
gacgggcagactccggaccgcaaggacagcctgcaagcagagcctggagagacactaccg
tcagcaaagcagccccagagcaccttcacccccagcccactccatcccacggccgcctcc
ctcccaggcacccccccgcgctcccccccgtcctccccgcaccggcaccccggcacgctc
acgcggaagcacgcctgcggccagcacggcgtccccagccggccgcccacccccggcggc
agccctcccaaccccgagggctgcctcttcgagtcctccgacctggctgacgaggaggtt
cgccacatcaacagctcggccaaagactggggaggggagcactcggacgctgggagccgc
tcgacttcgccgttcatctccccggccccgtctccagtgcccctcaagaactgcagcaca
accagcctctccgggggcagcagcaaggagaaggacttgaagaagttttacagcatcgat
gcgaagggcttcctcaacaagcccagctgggcagacgaccaaaggcggcactccatcgag
atctgcccctccgtcagcgacggggactgtcgctttgaggaccctgctgaggaaaagcag
cggtcccctgcccacacccagacggagtccgagtacatccacggagcccggaggaagaag
aagatgagcccgccctgcatttctatagatcctcccatggaggacgacggcggggcggcc
tcgcgcaccaaaccctccgagaacagcatgctgcggcgaaggaccccatcctgcgagttc
ccggcttacagagagtccctggagctcgcggagagccagcccggggagccggcctccaaa
gcggagcgccggggccagcccccgtgccgcggggagcacctgaccatccccaacttctcc
ttcgagcagtcggacggcagctccttgagcagcctctcggatctcctcctggacagcggt
cagtccacgccggcctccgtggactcccggccggatcccgccgcctccgaactgaaaaag
ccggatcacttaaaaactcagtggagcaactccgagaaaagcaaagagctcctgggcatt
gctaagagccccctccggaagcaggacttggtcccggtgactgttgcaacagaagaagac
atagacgaccctgtatag
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integrated database retrieval system
