Calonectris borealis (Cory's shearwater): 142089417
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Entry
142089417 CDS
T11211
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
142089417 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cbor04121
]
142089417 (SLX4)
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142089417 (SLX4)
Ubiquitin system [BR:
cbor04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
142089417 (SLX4)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
142089417 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
zf-met
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
142089417
NCBI-ProteinID:
XP_075022044
LinkDB
All DBs
Position
16:21160190..21196300
Genome browser
AA seq
1876 aa
AA seq
DB search
MDEQDSDFKELWANLLGRAKKKAGDAEAAKRAQNRSKTTAPKTKLRRGKAAAKSQNHHCL
PAAKETNLPQDLGPKEQKLVHKEDGDAVACSSGETAQGDGTRNPFPASQLSTVTSECSQR
TLTVNTLSGCSQTTLSFHPATQPGTCSSPTSKIPPLAGSKMRVAELVVERMQQFKRVAPE
QLKHSTDDSLPKSVASGDFPDESQEQKPSENDTHHLPSMEHDNALALALQQETKEEALAS
LEDAGLFFCQICQKDLSAMNTTRREQHVNRCLDEMEEAQMSSSSKPLVPECPICGKQFQT
PQSRVSHLKRCAVEMDVPPKLLLQAVQLQVSSLGDAPLQCPSNQPSRSKRKGSSKEDSKK
MQKRAKLETKDEDLLVAMAMSRSPLEQEKQEQAKSVTNVKSVAALPIKWKPGSEKKRRKR
GPTAPPPLLLQDPEKARKRIQERVAMLLAEEVEFPPTPQLPTSRILEDESGKATWLLPLS
KTRECFLWNISALTGPCDPESFYTAGLTPPIVPWKPVQNHKPENLLPSVGSDQPKVSQQI
QPDLGSHEPTCTEVGGQTSDESKSGPEGDGQFLSHSQKDVQTLQDLVELAREGLTLTQWN
LDVDHVQAAEQPGKDLISSDTPHRGFVPPSKEKSLLTSSCRRSSLRLLAEDFSAMVNNPH
LSDIQFQVDCGEVLYAHMFVLYARCPQAVQVVHSQGFLVEEDGNAQTRRVLLSDVTGEAV
CAFLRYLYAADADIPAGVLPQVGALAARFGVRELMAKCENNTGESQVSSGVDSEDDLISV
TDDKDCEDRAENFQDLLKSVWMGEDEEEVAMLNAECQKEDDNGMGEQELEEIYEFAATQR
KMVQGETEVSEGTDCSTCSDTEAAQGANQQTEEEEVKRSESPSISNSFKDLRDDNDVERS
KCDLSAQEEKMQNINRCKRVNDPQTTFVPHHGEPQKWDIASHGATANEGETVRRCEGVKD
SKSSQVSHDEADRCEKQFPSFHSDTNINESYERLFSATQGDYCEPSPMKEVIKESGKTPT
EKHVDVNDALLYSKSQKDLSPRRNGFYGTPPPKPYVPLFPAVGSSPASPKSERKFAREHV
STPKQNTKEKSFPSDETHFQKANELDTASRNENTISPAELPHIDLNKHTYVPVLSSLAIR
TQDVAAEGNKEGDVIVLSSDDEMELQQEKKSPEAGSALKKMEIPGQLKCTDVEQGPEIAK
PEHNSSVIETEQRSTQASCGVTDTAPISKDVKMSTELPLSRQIDACTESKRSPNLSPEKR
LGHEMSSGTESSWLLPDTPVLSKSRSFSTQTQVTGINSLKSAGSKLSTKNLAAGSSNHEV
TGNLIKVCETTLSDEHLPMENSVSARSPSSSPAAGSFSKNSLPVSPVDPVLLTPGHTDIK
SKCAKNSFLSQPVPPCHEQSLEDKTNISVVEIEDSEKEISLPSLSSSVLLCDEPPIPVDD
CWHVEYLSPVRGNSQDSHQVSRAKTSTASSPRPGSWHDQWESPVHVQEIKGSTPLQGSPV
GRRTTLLCFEKSPIEACSSVGSRPSYLNSKIWDDWNGEEEEDEFPEMLPLSQRLSAAAGA
CQTDPVKTPEPSCQENEKPPSTPVTPMPAYSIMETPQLKKELSRFGVRALPKRQMVLKLK
EIFQYTHQDVDSDFEDEIPSSQPPLQKSQAKRSRQSKADRTAGGKRANASRAVGKRKQVA
TASSVLPVGRADDDLVGSHETGCAASKEGTKMTHHPEGAKAQKRSSVSPERWSLVADGEE
PILSASQESAVSSADGSDISFGSQRSFMNGFEACAFASEDEEEELPASQAAAREEDKLEA
VRCYIRSNTALYHKILFYEPIELAELHTELKQNGIKISKAKLLDFLDAQCITFTTAGARK
EKEQKRKGNKKQRRRY
NT seq
5631 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacagtgattttaaagagttgtgggccaatcttttgggtagagcgaag
aaaaaagctggggatgctgaggcagcgaaaagggctcagaacaggtcaaagactactgca
ccaaaaaccaaattaagaagaggcaaagctgctgctaagagccaaaaccatcattgctta
ccagcagcgaaggaaacaaacttgcctcaagatttgggtccaaaggaacaaaaattggtg
cacaaagaagatggtgacgctgtggcctgtagtagtggtgagactgcacaaggggatgga
acgagaaaccctttccctgccagccagctgagtacagtgaccagtgagtgtagccagagg
accctgacagtaaatactctgagtggctgttcccagactacattatccttccatcctgct
acacagccaggaacctgctcttcacccacctcaaagataccgccgctcgcagggtcgaag
atgcgggtagcagagctggtagtggagagaatgcagcagttcaagagagtggcacctgag
cagctaaaacacagcacagatgatagcttgccaaagtctgtagccagcggggatttccct
gacgaaagccaggagcagaagccatcagagaatgatacccaccatcttccatccatggag
catgacaatgcgctggctttggctcttcagcaggaaaccaaagaggaagccctggcaagc
ctagaggatgcaggcttgtttttttgtcagatctgccagaaggatctctcagccatgaac
acaacgcgacgagagcagcatgttaacaggtgtctggatgagatggaagaagcgcagatg
tcatcctccagcaaaccactggtccccgagtgtcccatctgcgggaagcagttccaaacc
ccacagagccgagtcagtcacttgaaacgctgtgctgtcgagatggatgttcctcctaag
ctgcttcttcaggcagtgcagttgcaggtatcctcgcttggtgatgcacctcttcagtgt
cccagcaatcaaccaagcaggtcaaagcgaaaaggctcctccaaagaggactcaaagaaa
atgcagaagagggccaaactggagactaaggatgaagatttgctggttgctatggcaatg
tcacgctctccgttggagcaagaaaagcaggaacaagcaaaatcagttacaaatgtgaaa
tcagtggctgctttgccaatcaaatggaagccaggatcagagaaaaaacggcgtaaaaga
ggcccaactgcacctccaccattactgcttcaggacccagagaaggcccgcaaaaggatc
caagagcgagtagctatgctgcttgcagaagaggtggaattccctcccacccctcagctt
cccactagtaggattttggaggatgaatctgggaaagcaacctggctcttgccattgtcc
aaaaccagggagtgctttttatggaatatcagtgctctgacaggaccctgtgaccctgaa
tcattctacactgctggattaacccctccaattgtaccttggaagcctgtgcagaatcat
aagccagagaaccttctgccatcagtgggatctgatcagccaaaagtatcccagcaaatt
cagcctgacctcggttctcatgaacccacttgcacagaggttggaggccaaacttctgat
gaatccaagtcaggccctgaaggagatgggcagtttttatctcacagccagaaggatgtt
cagaccctgcaggacctagttgagttggccagggaaggacttacccttactcagtggaac
cttgatgttgaccacgttcaggcagcggagcagccaggaaaagacctgatttccagtgat
actccacatcgtggctttgtgcccccatccaaagagaagagcctcctgacgagcagctgc
agaagatcctctctcaggttgctggctgaagatttcagtgcaatggtcaacaacccccac
ttaagtgatatccagttccaggtggactgtggggaggtcctttatgcccacatgtttgtg
ttgtatgcacgctgtccacaagccgttcaggttgttcacagccaagggttcttagtggag
gaggatgggaacgcgcagacacgccgtgtgctgctgagtgacgtgacgggagaggcggtg
tgtgcgttcctgcgatacctttatgctgctgatgctgacatccctgctggggtgctgccc
caggtgggggctctggctgccaggtttggtgtgagggagctgatggcaaagtgtgaaaac
aacactggagagagtcaggtgtcctctggagtggattcagaagatgatcttatctctgtg
acggatgacaaagattgtgaggacagagctgagaacttccaagacctcttgaagtcagtg
tggatgggtgaagatgaggaagaagtagctatgctgaacgctgaatgccagaaggaagat
gataacgggatgggtgaacaggagctggaggaaatctatgagtttgctgcaactcagaga
aagatggttcaaggtgaaacagaggtgagcgagggaacagactgcagcacgtgcagtgat
actgaggcagcccaaggtgcaaaccagcaaactgaggaggaagaggtaaagagatctgaa
tctccttcaataagcaacagcttcaaagatttgagggatgacaatgatgtggaaaggtct
aaatgtgacttgtctgcacaagaagagaaaatgcagaatataaataggtgcaagcgcgtg
aatgatccacagaccacttttgtgcctcaccacggtgaacctcaaaaatgggacatagca
tcccatggtgccactgctaatgaaggagagactgttaggaggtgtgaaggtgtgaaggat
tccaagtcatctcaggtctcacatgacgaggcagatcgctgtgaaaaacagtttcctagc
ttccacagtgatactaatataaatgaaagctatgagcgcttgttttctgcaactcaggga
gattactgtgagccttccccaatgaaagaagttatcaaagaatcaggaaagactcctact
gaaaaacatgttgatgttaatgatgcacttctgtacagcaagtcacaaaaagacctctct
ccacgcaggaacggtttttatgggactcctcctcccaaaccttatgtgcccctttttcct
gctgttggctcttcacctgcatctccaaaatcagagagaaagtttgccagagaacatgta
tcaacaccaaagcaaaacacaaaggaaaaatcattcccatctgatgaaacacactttcag
aaagccaacgagctggatactgcatcaagaaatgagaacacaatttctccagcagagctt
ccccacattgatttaaacaagcatacatatgtcccagtgttgtcatcactggccatcaga
actcaggatgttgcagctgaggggaacaaggagggtgatgttattgttttatcttctgat
gatgaaatggagttacaacaagagaagaagtcgccagaggcaggctctgccctgaagaaa
atggaaatccctgggcaactgaaatgtacagacgtagaacaaggtcctgagatagcaaaa
cctgaacataactcatcagtcattgaaacagagcagagatcaacccaggcctcatgtggc
gttacagatacagcgcctataagtaaagatgtaaagatgtccaccgaattgcctctcagc
agacaaatagatgcttgtacggagagcaaacggagtccaaacctgagccctgaaaaaagg
ctcggtcatgaaatgtcttcaggtacagagagttcctggctactgccagacacaccggtt
ctgagcaaaagcagaagtttctcaacacagactcaggtcacaggtattaattctttaaag
agtgcgggatctaaactcagcacaaagaacttagcagcaggtagtagtaaccatgaagtg
actggaaatttaataaaagtttgtgaaacaacattgtcagatgaacatttgcctatggag
aactcagtcagtgcaaggagcccttccagcagcccagcagcaggatcattttccaagaac
tccctaccagtttctccagtggatccagttctcctcacccctggccacaccgacataaaa
agcaagtgtgccaagaactcatttttatcccaacctgtgcctccgtgccacgagcaatcg
ttggaagataaaacaaatatcagtgtggttgagatagaggacagtgaaaaggaaataagt
ctgccttctttgagtagtagcgtcttgctttgtgatgagcccccaatccccgttgatgac
tgctggcatgttgaatatctgtcaccagtcagaggtaacagccaggactcccaccaggtc
agccgcgcgaagaccagcactgccagcagccccagacctggctcttggcatgaccagtgg
gagagcccagtccacgtgcaggaaattaagggcagtacccctcttcaaggaagtcctgtt
ggcagaagaacaactttgctctgttttgaaaagagtcctattgaggcatgttcatcagtg
ggcagtagaccaagttacctgaactccaaaatctgggatgactggaatggagaagaagag
gaagatgaatttccagagatgcttcctctgtctcagaggttgtcagctgcagcaggtgcc
tgtcagacagatcctgtaaagactcctgaaccttcctgtcaggagaacgaaaagcctccc
agcactccagtgacaccaatgccagcttactccatcatggagaccccacagctgaagaag
gagttgagcagatttggagttcgtgctctcccaaaacgccagatggtgttgaagctgaag
gagatattccagtatacccaccaggacgtggactctgactttgaggatgaaatcccgtct
tcccagcctcccctgcagaagtcccaggccaaacgctccaggcagtcaaaggcagaccgg
actgcaggtggaaagcgtgccaatgcctcgagggctgtgggcaaaaggaagcaggttgct
acggcttcttcagtgctccctgtggggagggctgatgatgaccttgttggatcccatgaa
acaggctgtgcagcatccaaggagggaactaaaatgacgcatcacccagaaggagccaaa
gcgcagaaaaggtcatctgtatctccagagagatggtctctggtagctgatggtgaggaa
ccaatactgtcagcatctcaggagtctgcagtttcttcagcggatggaagcgacatctct
tttggttcacagaggtctttcatgaatggatttgaagcctgtgcttttgcatccgaggac
gaggaagaggagcttccagcatctcaggcagcagctcgggaagaagataagctggaggca
gtaaggtgctacatccgttcaaacacagccctgtaccacaagattctcttttatgagcca
attgagctggctgagctgcacacagagctgaaacagaacggcattaaaatttccaaggca
aagctgctggactttttagatgctcagtgtatcacatttaccacagctggagcccggaaa
gagaaggaacagaaaagaaaggggaacaaaaaacagaggagacgatactga
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integrated database retrieval system
