Calonectris borealis (Cory's shearwater): 142089575
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Entry
142089575 CDS
T11211
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03250
Viral life cycle - HIV-1
cbor04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
142089575 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
142089575 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142089575 (SAMHD1)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
142089575 (SAMHD1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
HD
PDEase_I
HD_assoc_2
HARE-HTH
Pre-PUA_NSUN2
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
142089575
NCBI-ProteinID:
XP_075022308
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All DBs
Position
17:976746..1006701
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AA seq
621 aa
AA seq
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MGSPAAAAGWGAAPAKRARREGSPEGPRGPAAESDRCDPCDPRLWDTERLCQHLSRCGVG
EPSLLHRFRESGVTGSMLLDLPACALEVTRVCLPAERLKVLACLNKLRQQHVDVMKVFND
PIHGHIEIHPLLVRIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSIGVGYLAGCLVR
ALKERQPELDITQRDILCVEIAGLCHDLGHGPFSHMFDGRFIPLTRPDLKWKHETASVEM
FEHLITSNKLEEVMKSYGLVPEEDMNFIKEQIGGPIDETACEKSWPYRGRQKEKSFLYEI
VANKKNGIDVDKWDYFARDCHHLGIQNNFDYKRLLKFTRVCEVKNQKRICTRDKEVGNLY
DMFHTRNCLHRRAYQHKIGNIIEIMITEAFQKADKFFKIEGSRGKLYQISTAMEDMEAYT
KLTDNIYLEILHSSCPELKEAREILQKIERRELYKFLGETQPETMREIVKNNSLAESIAN
SKPEKDPPDVELKAEDFIIDVINMDYGMKEQNPIDNVLFYCKADPSKAVKISKEQVSKLL
PMRFAEQVIRVYCKSQDPDIVSAAKQYFIQWCIEKDFTKPQDGDVVAPHLTPMKRSWNNT
RDDEHRTASEPSCKQRLPFDK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggggagcccggcggcggcggcgggctggggcgcggctcccgccaagcgggcgcggcgc
gagggctcccctgaggggccgcgcggccccgcggcggagagcgaccgctgcgacccctgc
gacccgcggctgtgggacacggagcggctctgccagcacctttcgcgctgcggcgtgggc
gagcccagcctgctgcaccgcttccgagagagcggagtcaccgggagcatgctgctggac
ctgcccgcctgcgccctcgaggtcacccgcgtctgcctcccagctgagagactgaaagtt
ctggcctgcctgaacaagctgagacagcagcacgtggacgtaatgaaggtttttaatgat
ccaattcacgggcacattgaaatacatccccttcttgttcgtatcatcgacacacctcag
tttcagcgcctcagatacattaagcagctgggtggcacttactttgtttttccaggagcc
tctcacaaccgctttgaacactctataggggtgggctacctagcaggatgtctggttcgt
gcactgaaggagagacaaccagaactggatataacccagcgagacatcctctgtgtagaa
attgctgggctttgtcatgatttgggtcatgggccattttcacacatgtttgatggaaga
tttattccactcactcgtccagatttgaagtggaagcatgaaactgcttctgttgaaatg
tttgagcatctgatcacttccaataaactagaagaagtcatgaagtcatatggtctcgtc
ccggaagaagatatgaacttcatcaaggaacaaataggagggcctatagatgaaaccgct
tgtgagaaatcgtggccctaccgtggtcgacaaaaggagaaaagtttcctctatgagata
gtagctaacaaaaaaaatggcattgacgtggacaaatgggattattttgcaagggattgc
catcacctaggaatccagaataattttgattataagcgattacttaaattcactcgggtc
tgtgaagtaaaaaaccagaagcgtatctgtacccgtgacaaggaagttggaaatttgtat
gatatgttccacacacggaattgcctgcaccggcgagcatatcagcataagattggcaac
atcattgaaataatgattacggaagcctttcaaaaagcagacaaattttttaaaatagaa
ggctcaagaggaaaactgtaccagatttctacagcaatggaggacatggaagcctacact
aagctaactgataatatctacctggaaattctgcactcaagttgtccagaactgaaggag
gcacgagaaattttgcaaaaaatagaacgacgtgaattatacaagtttttaggagagact
caacctgaaacaatgagggaaattgtaaagaataatagcctggcagaaagcattgctaat
tccaagccagaaaaggatcctccagatgtggagctaaaggctgaagatttcataattgat
gttatcaatatggattatggaatgaaggaacagaatcccattgataatgttctcttctat
tgcaaggctgatccttccaaggcagtcaagatcagtaaagaacaggtttcaaagctttta
cccatgaggtttgcagagcaggttatccgcgtttattgcaaaagccaggatccagacatt
gtttcagctgcaaaacagtattttattcagtggtgtatagagaaggatttcaccaaacca
caggatggtgatgtggttgcccctcatctaacgccgatgaagagaagctggaataacaca
agagatgatgaacacaggacagcttcagaacccagttgtaaacaaaggcttccttttgat
aagtaa
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