Calonectris borealis (Cory's shearwater): 142089727
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Entry
142089727 CDS
T11211
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142089727 (CSTF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142089727 (CSTF1)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
142089727 (CSTF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
CSTF1_dimer
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_VPS8
ASA1
Beta-prop_EIPR1
Beta-prop_DCAF4
WDR90_beta-prop_4th
PAC11
Beta-prop_Aladin
CFAP251_N
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
DSE1_N
Beta-prop_NUP159_NUP214
PROPPIN
Beta-prop_WDR11_1st
Beta-prop_WDR75_2nd
Frtz
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
142089727
NCBI-ProteinID:
XP_075022668
LinkDB
All DBs
Position
17
Genome browser
AA seq
537 aa
AA seq
DB search
MSGRRVAAACDRRQLPRGMGSMASPLLDPRPLRLPFLEADSRLQSICGRSMQQPSRRSIL
RSRPPPPPPPLPPPPIDALRAPVAILGGERGRQKEGSAPPRHSLLTMYRTKVSLKDRQQL
YKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDSAVQYAIGRSDT
VAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKI
LDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRD
YTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVS
CNPQDQHTDAICSVNYNASANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIF
SKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAVFNHTEDYVLLPDER
TISLCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYRARFWYRRSTTD
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtcgtcgtgtcgctgcagcatgtgatagacgtcagctgccacggggcatgggt
agcatggcatcccccctccttgacccgcgtccacttcgactaccgtttcttgaggctgac
agtcgcctccaatcgatttgcgggcgctcgatgcagcagccttcgcggaggagcattctt
cggtcccggccgccgccgccgcctcctcccctgccgccgccgccaatcgatgcgctcagg
gctccggtcgccattttagggggcgagcgagggaggcagaaggaagggtcggcccctcca
aggcattccttgctcacaatgtatagaacaaaagtcagtttgaaagaccgtcagcaactt
tataaactgataattagtcagctgctatatgatggatacataaatattgccaatggcttg
ataaatgagataaaaccacaatcagtctgtgcaccatctgaacaactgctgcacctaatt
aagttaggaatggagaacgatgacagtgctgttcaatatgcaattggacggtcagatacg
gtagctccaggcacaggaattgacttggaatttgatgcagatgtacagaccatgtctcct
gaggcttctgaatatgagacttgttatgtcacatctcataaaggaccgtgtcgtgtagct
acatatagcagagacggacagttaatagctacaggatctgctgatgcctcaataaaaatt
cttgatacagagagaatgttggccaaaagtgctatgcctattgaggtcatgatgaatgag
acagcacagcaaaacatggaaaatcaccccgttattcggactctgtatgatcatgtggat
gaagttacgtgtttagcttttcatccaacagaacagatcctagcatctggttcaagggac
tacacacttaaattgtttgattattcaaaaccttctgccaaaagagccttcaaatatata
caggaagcagagatgttgcgctcaatttcttttcacccttctggagatttcatacttgtt
ggtacccagcaccctactttacgactgtatgatatcaatactttccagtgttttgtgtct
tgcaatcctcaagatcagcacactgatgctatatgttcagtaaattacaacgcaagtgca
aacatgtatgtgacaggaagtaaggatggatgcatcaaactgtgggatggtgtttcaaat
cgctgtatcactacttttgagaaggcacatgatggagctgaagtctgttctgctattttt
tccaaaaattcaaagtatatcttgtcaagtggaaaagactctgtagctaaactatgggag
atatccactggtcgaacactggtcaaatacacaggagctggtttgagtggacgacaagta
cacaggacacaagctgtcttcaaccacacagaagattatgtgctgcttccagatgaaagg
accataagtctgtgctgctgggattcaagaactgctgaacggagaaatcttctttctctt
gggcacaacagcattgtccgttgtattgtccattctcctaccaatcctggcttcatgacc
tgcagtgacgactacagggctagattttggtacagaaggtcaacgacagactaa
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