Calonectris borealis (Cory's shearwater): 142090008
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Entry
142090008 CDS
T11211
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5
KO
K13174
THO complex subunit 5
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03013
Nucleocytoplasmic transport
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142090008 (THOC5)
09122 Translation
03013 Nucleocytoplasmic transport
142090008 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142090008 (THOC5)
03041 Spliceosome [BR:
cbor03041
]
142090008 (THOC5)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
142090008 (THOC5)
Spliceosome [BR:
cbor03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142090008 (THOC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
142090008
NCBI-ProteinID:
XP_075023313
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All DBs
Position
18:1870583..1886555
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AA seq
683 aa
AA seq
DB search
MSSDSSKKRKPKVIRTDGGLQEGKRGKADADQDVRYYSEECEVDLRDPIKDYELYRETCQ
ELQRLMAEIQELKSRGIKDNASEIDERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSLEEFYKEAPAEISRPAITL
SEPHQQTLARLDWELEQRKRLAEKYKECLTSKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQASAYGQACDKKLVVAIEGSVEEAKAL
YKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVTVDLKCKDENVL
HLTFYYLMNLNVMTVKAKVTTAVEMTTAISAGDLLSPDSLLNCLYPGDHGRKTPNPANQF
QFDKVGILTLSDYMTELGHPYVWVQKLGGLHFPKDQPQHTVTADNSLSASHMELTVKLLR
TRLQSRLALHKQFASLEHGVVPVSSECQHLFPTKIVSRLVKWAAIPYEDYAELPYTKDVI
EAGLAEDTHLYYMALIERGTAKLQAAVVLNPGYSTLPPVFSLCLNWKGERTSSNDDNIRA
MESEVNVNYKELWGPKPGYQLLTNQLQRLCMVLDVYLETEPHDTSVEGPKEFPQEKMCLR
LVRGPMRLKPFKFNYPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggactccagcaagaagaggaaacccaaagtgatccgcacggatgggggtctg
caggagggcaagcggggcaaggccgatgccgaccaggatgttaggtactacagcgaggag
tgcgaggtggatctccgggaccccatcaaggactacgaactctacagagagacctgccag
gagcttcagagactgatggcagaaatccaggagctgaagagcagaggcatcaaggataac
gcttccgagatcgacgagcggcggattcagagctgcgtccacttcatgaccctgaagaag
ctcaaccggctggctcatattcgcctgaagaaagggagagatcaaacccacgaggcgaag
cagaaggtggacgcctatcacctgcagctccagaacttgctctacgaggtgatgcacctg
cagaaagagatcaccaaatgcctggagttcaagtcaaaacatgaggaaatcgaactggtg
agcctggaggagttttacaaagaggcccctgcagaaatcagccggccggccatcaccctc
tccgagccccatcagcagaccctggcccgcctggactgggagctggagcagcgcaagagg
ctggcagagaagtacaaggagtgcctgaccagcaaggagaagatcctgaaggagatcgag
gtgaagaaggagtatctgagcagcctccagcctcgactcaacagcatcatgcaggcctcc
ctgcctgtccaggagtatctcttcatgcctttcgaccaggcgcacaagcagtacgagaca
gcccgacacctcccgccgcctctctacgtcctctttgttcaagccagtgcctacggtcag
gcctgcgataagaagcttgtggtggccattgaagggagcgtagaggaagccaaagccctg
tacaagccgcctgaggactcgcaggatgatgaaagcgattctgacgcagaggaggagcag
accacgaagcggcgcaggcccaccctgggcgtgcagctggacgacaagcgcaaggagatg
ctcaagcggcaccccttgtccgtcaccgtcgacctgaagtgcaaagatgagaacgtgctt
cacctgaccttctactacctgatgaacctcaacgtcatgacggtgaaagccaaggtgacc
actgccgttgagatgacaaccgccatcagcgctggtgacctgctctccccagactccctc
ctcaactgcctctatccaggagaccacgggaggaaaacgcccaacccggccaaccagttc
cagttcgataaagtgggcatcctgaccttgagcgactacatgacagagctggggcacccc
tacgtgtgggtgcagaagctgggcggcctgcatttccccaaggatcagcctcagcacacg
gtcactgcggacaactcgctgagcgccagccacatggagctgactgtgaagctgctgcgg
acgaggctgcagtcccgcctggctctccacaagcagtttgcgtcgctcgagcacggcgtt
gtgccagtctccagcgagtgccagcatctcttccccaccaagatcgtctcgcgcctggtg
aagtgggctgccattccctatgaagattacgcggagctgccctacactaaagatgtgata
gaggctggcttggctgaagacactcacctctactacatggccctgatagaaaggggaaca
gccaagctccaggccgccgtggtcctgaaccccggttactccacgctgccgcccgtcttc
agcctgtgcctgaactggaaaggagagcgaaccagcagcaacgacgacaacattcgggcc
atggagagcgaggtcaacgtgaactacaaggagctgtgggggcccaaaccgggctaccag
ctcctcaccaaccagctgcagcgcctgtgcatggtgctggacgtctacctggagacggag
ccccacgacaccagcgtggaggggcccaaggagtttccccaggagaagatgtgtctgcgc
ctcgtcagggggcccatgcgcctgaagcccttcaagttcaactaccctcaggggttcttc
agccatcgctga
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