Calonectris borealis (Cory's shearwater): 142090016
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Entry
142090016 CDS
T11211
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03030
DNA replication
cbor03410
Base excision repair
cbor03420
Nucleotide excision repair
cbor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
142090016 (RFC5)
03410 Base excision repair
142090016 (RFC5)
03420 Nucleotide excision repair
142090016 (RFC5)
03430 Mismatch repair
142090016 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbor03032
]
142090016 (RFC5)
03036 Chromosome and associated proteins [BR:
cbor03036
]
142090016 (RFC5)
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142090016 (RFC5)
DNA replication proteins [BR:
cbor03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
142090016 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
142090016 (RFC5)
Chromosome and associated proteins [BR:
cbor03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
142090016 (RFC5)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
142090016 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
142090016 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_24
AAA_22
AAA_11
AAA_assoc_2
DEAD
AAA_14
ResIII
RuvB_N
DUF815
AAA_5
AAA_30
AAA_19
PhoH
AAA_7
TniB
TIP49
DNAX_ATPase_lid
ATPase_2
nSTAND3
Mg_chelatase
AAA_25
Thioredoxin_6
bpMoxR
AAA_28
Hydantoinase_B
Motif
Other DBs
NCBI-GeneID:
142090016
NCBI-ProteinID:
XP_075023339
LinkDB
All DBs
Position
18:complement(2002824..2006095)
Genome browser
AA seq
329 aa
AA seq
DB search
MARAGGGNLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLRHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTTMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSVRIQLLIKMADIEYR
LAAGTSEKIQLSSLIAAFQVTRDLIVAEA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgggcgggcggcgggaacctgccgtgggtggagaagtaccggccgcaggcgctg
tcggagctggtgtctcaccgggatatcctcagcaccgtgcagcggttcatcagtgaggat
cggctcccacatcttctcctctatggtcctcccggtaccggtaagacctcgaccatcctg
gcctgcgccaggcagctctaccgggagcgggagtttggctccatggtgctggagctcaac
gcctccgatgaccggggtatcgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatctttaagaaaggcttcaagctcgtcatcctggatgaagccgacgccatgacc
caggatgcccagaacgccctgaggcgagtgatcgagaagttcacagaaaacacccgcttt
tgcctcatctgcaactacctctccaagatcatccccgccttgcagtcccgctgcacgcgc
ttccgcttcggccccctcaccccggagctgatggtgccccggctgcggcacgtcatacag
gaggagggggtggatgtgactgaggatgggatgaaggctctggtgaccctctcgagcggt
gacatgcgcagagccctcaatatcttgcagagcaccaccatggctttcgggaaggtgacg
gaggagaacgtctacacctgcacgggccaccccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggacttttccaccgcctatcgcaaaatcatggagctgaagacg
ctgaagggcttggccctgcaggacatcctcaccgagatccatctgttcgtgcacagagtc
gatttcccaccctcggtccgcattcagctgctgatcaaaatggcagacatcgagtaccgg
ctggctgctgggaccagtgaaaagattcagctgagctccctcatcgcggctttccaagtc
accagggacctgatcgtggccgaagcctga
DBGET
integrated database retrieval system
