Calonectris borealis (Cory's shearwater): 142090604
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Entry
142090604 CDS
T11211
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142090604 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbor03041
]
142090604 (PRPF8)
Spliceosome [BR:
cbor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
142090604 (PRPF8)
Complex C
U5 SnRNP specific factors
142090604 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
142090604
NCBI-ProteinID:
XP_075024853
LinkDB
All DBs
Position
19:6508810..6528646
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcttcccgtaccgcggcggctgcgccccggtgcccagcccgctggcgccg
ctgcccgactacatgtctgaggagaagctgcaagagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggagaagaggaaattcggcttcgtcgacgcgcagaaggaggac
atgccccccgagcacgtccggaagatcatccgcgaccacggcgacatgaccaacaggaag
ttccgtcacgacaagcgcgtctacctgggtgctctgaagtacatgcctcatgcagttctg
aagctcttggagaacatgcccatgccctgggagcaaatcagagatgttccggtcttgtac
catatcacaggcgccatctctttcgtgaatgagattccctgggtcatagagccggtgtac
attgctcagtgggggtcaatgtggattatgatgaggcgggagaagagggataggcgtcac
ttcaagaggatgagattccccccgtttgatgatgaagaaccccctctggattatgctgat
aacatcctggatgtggagcccctggaagcgattcagcttgagctggatccagaggaggat
gcccccgtgctggactggttctatgaccaccagcccctgaaggacaacaggaagtatgta
aatggttcaacgtaccagcgttggcagttcactctcccgatgatgtccacgctgtaccgg
ctggccaaccagctgctcactgaccttgtggatgacaactatttctatttgtttgacctg
aaagcattctttacctccaaggcactgaacatggctattcctggaggtcccaagtttgag
cctcttgttagagacatcaatcttcaggatgaagactggaatgaatttaatgacatcaac
aaaattatcatcaggcagccgatcaggacagagtacaaaatcgctttcccgtacctgtac
aataacctgccacaccatgtccacctcacctggtaccatactccaaacgtcgttttcatt
aaaacagaggatcctgatcttccagctttttacttcgatccactgatcaaccccatttca
cacagacattccgtcaagagtcaggaaccgttgcctgatgacgatgaagagtttgagttg
ccagagtttgtggaacctttcctgaaggataccccgctctacacagataacacagccaac
ggcattgccctgctgtgggccccacggcccttcaacttgaggtctgggaggactcggaga
gctcttgatatcccactggtcaagaactggtatcgtgagcactgcccggcaggccagcca
gtgaaagtgcgagtctcctatcagaagctactgaaatattatgttctgaatgcgctcaag
cacagaccccccaaggcccagaagaagaggtacctgttccgctccttcaaggctacgaag
tttttccagtcaacgaagctggactgggtggaagtaggcctgcaagtgtgtcgccagggc
tacaatatgctaaacttgctgatccacagaaagaacctgaactaccttcatttggattac
aacttcaacctgaagcccgtgaagaccctcaccactaaggaaaggaaaaaatctcgtttc
ggtaatgctttccatctgtgccgagaggttctgcggctgactaagctggtggtggacagc
catgtccaatacagacttggaaatgtggatgcgtttcagttggcagatggcttgcagtac
atctttgcccatgtgggtcagctgacaggaatgtaccggtacaagtacaaactgatgagg
cagattcgtatgtgcaaggacctgaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtcctggctgtggcttctgggctccaggctggagagtatggctgttcttc
atgaggggcatcacgccactgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactcaaagggtgtagcaaagactgtcacgaagcagcgtgtggagtctcac
tttgacctggagctgagggcagccgttatgcatgacattctggacatgatgccagaagga
atcaaacagaacaaagccagaaccatcctgcagcatctgagcgaggcttggcggtgctgg
aaggccaatatcccctggaaggtgccagggctgccaactcctattgagaacatgatcctg
cggtacgtgaaggcaaaagctgactggtggacaaatacagctcactacaacagggagcgg
atccgtcggggtgccactgtggacaaaaccgtctgtaagaagaatctgggccggctgacc
agactctacttaaaagctgagcaggaacggcagcataattacttgaaggatgggccttac
atcacggcagaagaggctgttgctgtgtacacaaccacggtgcactggctggaaagcagg
aggttctcacccattcccttcccgccgctgtcctacaagcatgacaccaagttgctcata
ttagccctggaaaggctgaaggaagcttacagtgtgaaatctcgcctgaatcagtcgcag
agagaggagttgggcttgattgaacaggcttatgataatcctcatgaagctctgtccaga
atcaaacgacaccttttaactcagagagccttcaaggaggtgggtattgagttcatggat
ctctacagccacttagttcctgtttatgatgttgagcccttggagaaaatcacagatgct
tatctggatcagtacttgtggtatgaggccgataagcgacgactcttccctccgtggatc
aaacctgctgacactgaacctcctccactgttggtgtacaagtggtgccaaggcattaat
aatcttcaagatgtttgggaaacgagtgaaggtgaatgcaatgtgatgctggaatctcga
tttgagaagatgtatgagaagattgacctgaccttgctcaacaggctgttgcgtcttatt
gttgatcacaacattgctgactacatgacagccaagaacaacgtggtgatcaactacaag
gacatgaatcacacaaactcttatgggattattcgtgggctgcagtttgcttccttcatt
gtccagtattatgggcttgtgatggacctgctggtgctgggtctgcaccgtgccagtgaa
atggctgggcctccccagatgccaaatgacttcctcagcttccaagacattgccactgag
gtggcccatcccattcgcctcttctgcagatacattgaccgtattcacatcttcttcagg
tttacagcagatgaggcaagagacttgattcagcggtacctgacagagcatccagatccc
aacaatgagaacattgtaggctacaacaacaagaagtgctggcctcgggatgctcggatg
cgcctcatgaaacatgatgtgaaccttggtcgtgctgtattctgggatatcaagaaccgt
ttgcctcgatcagtcaccacggtgcagtgggagaatagcttcgtatccgtttacagcaag
gataaccccaatttgctgtttaacatgtgtgggtttgagtgccgcatcttgcccaagtgc
cgtaccagctatgaggagttcacccacaaggacggtgtctggaacctgcagaacgaggtc
accaaggagcgcacagctcagtgcttcctgcgtgtggatgacgagtctatgcagagattt
cacaacagagtgaggcagatcctcatggcatctggctccacaaccttcactaagattgtc
aataaatggaatacagctctgattggcttgatgacatatttccgggaagctgttgtaaat
actcaggagttgcttgatttgctggtgaagtgtgaaaataaaatccagactcgaatcaaa
attggcctgaattccaaaatgccgagccgttttccaccagtggtgttttacacccctaaa
gagctgggagggctgggcatgctctccatgggccatgttctcatcccgcagtctgacctg
aggtggtccaagcagacagatgttggcatcactcacttccgctcaggaatgagtcatgag
gaggaccagctcatcccaaatttgtatcgttacatccagccatgggagagtgaattcatt
gactctcagagagtatgggcagagtacgccctcaagcgacaagaggctatagcccagaac
aggcgtctgacgctggaggatctggaggactcatgggaccggggaattcctcgtattaac
acccttttccagaaggaccggcataccttagcttatgataaaggatggagagtcaggacc
gacttcaaacagtatcaggtcctgaaacagaacccgttctggtggacgcatcagcgccat
gacggcaaactctggaacctgaacaactaccgcacagatatgatccaggcccttggtgga
gtggaaggaatcctggagcacactctcttcaagggcacttacttccccacgtgggagggt
ctcttctgggagaaggccagtggctttgaggagtccatgaagtggaagaagctgacaaat
gcccagagatcgggtttgaaccaaattccaaacagaagattcaccctgtggtggtctcct
accattaacagagccaacgtatatgttgggtttcaggtgcagctggatttgacaggcatc
tttatgcacggcaagatccccacgctgaagatttctctcattcagattttccgagctcac
ttgtggcaaaagatccatgagagcattgtaatggatttgtgtcaggtgtttgatcaagag
ctggatgctctggagattgagacagtgcagaaagagacgatccatcccaggaagtcgtac
aagatgaattcctcatgtgcagatatccttctctttgcttcctataagtggaatgtgtca
cgtccatcattgctcgcagattccaaagatgtgatggacagcaccaccactcagaagtac
tggatagatatccagctgcgctggggagattacgattcccatgatatcgagcgctatgca
agagccaagttcctggactacactacagacaacatgagtatctatccatctcctactggt
gtgctcattgccattgatctggcctataacttgcacagtgcttatgggaactggttccct
gggagcaaacctctgatccagcaggctatggccaaaattatgaaagcaaatcctgcgctg
tatgtgttgagagaacgaatccgcaaggggttgcagctgtactcatctgagcccacagaa
ccatacctttcctcccagaactatggagagctcttctccaaccagatcatctggtttgtg
gatgacaccaatgtgtacagagtcaccattcacaagacttttgaagggaatttgaccaca
aaacctatcaacggagccattttcatcttcaatcccagaactggacagctcttcctgaag
atcatccatacgtctgtgtgggcaggacagaagcgtctaggacagctggccaagtggaag
actgctgaagaagtggctgccttgattcggtcacttcctgtggaggagcagcctaagcag
atcatagtgactcggaaggggatgttggacccacttgaggtgcacttgctggatttcccc
aatattgtgatcaaaggctcagagttgcagctgcccttccaggcctgtctgaaagtggag
aaatttggtgatctcatcctgaaggctactgaaccccagatggttctcttcaatctctac
gatgactggctgaaaaccatctcttcctacacagcattctctcgtctgattctaattctc
cgagcactacatgtgaataacgatcgagccaaagttattctgaaaccagacaagacaacc
ataacggagcctcaccacatctggccaaccctgacagatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatccttgctgactatggcaagaagaacaatgtcaatgttgcg
tccctgacacagtcagagatccgagacattatcctgggcatggagatctctgccccgtct
cagcagagacagcagattgcagaaattgagaagcaaaccaaggagcagtcgcaactgaca
gccacacagacccgcactgttaacaaacacggggatgaaatcatcacctctacaaccagc
aactacgaaacccagactttctcctccaagactgagtggcgagtcagagcaatttctgct
gccaacctccacctgcgaacaaaccacatttatgtttcatcagacgatataaaggaaacg
ggctatacctacattcttcccaagaacgtgttgaagaaattcatctgcatctcagatctg
cgggcccagattgcaggttacctgtatggagtgagccctcccgataacccccaagtgaag
gagatccggtgcattgtaatggtgccccagtggggaacgcaccagaccgtgcatctcccg
gggcagctgccgcagcatgaatatctcaaggaaatggaacctctggggtggattcacacc
caaccaaacgagtcccctcagctctcgccacaggatgtcaccacccatgccaaggtcatg
gccgacaacccctcctgggacggggagaagactatcatcatcacctgcagttttacgcca
ggctcctgcacgctgacagcctacaaactgaccccgagcggctacgagtggggcaggcag
aacacggacaaagggaacaaccccaagggctacctgccgtcccattacgagagggtgcag
atgctgctgtcagatcgcttcctcggcttcttcatggtcccagcgcaagggtcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaggtccatcgcccttctcatttcctcaacttcgccctgctg
caggagggggaggtctactccgccgaccgggaggacctctacgcctag
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integrated database retrieval system
