Calonectris borealis (Cory's shearwater): 142090606
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Entry
142090606 CDS
T11211
Symbol
SCARF1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
142090606 (SCARF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbor04131
]
142090606 (SCARF1)
Membrane trafficking [BR:
cbor04131
]
Endocytosis
Phagocytosis
Scavenger receptors
142090606 (SCARF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
142090606
NCBI-ProteinID:
XP_075024858
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All DBs
Position
19:6534724..6541082
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AA seq
873 aa
AA seq
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MGSTRPILCLQLWLWVQSSAQELDPDGRNVCRLPAGPACCPGWKQEGRECTAALCEGEDA
CGVDEVCVRPGVCLCKPGFFGADCSSRCPEQYWGPDCKRSCPCHPNGRCDPASGRCTCNP
NHWGGLCQFPCQCGPHGRCDPLTGACRCEPGWWAPTCKKQCQCNSASSHCDPLTGHCRCL
PGWWGRRCSFKCSCNLSPCAQETGKCECKAGFWGPACQRRCDCLHGSCSPLSGHCSCSPG
YQGRSCRDPCPAGKYGSQCVHSCGSCKRSQPCSPVDGFCLACQPGWNGTLCKEPCAPGFH
GEDCLQPCPRCRRGEVCDPETGSCPHCEPGWMGPSCNSSCPAGTFGDGCQLLCPECVAGS
CDPVSGACICQAGYWGASCNDTCPEGYFGVNCSSPCQCSRGTCHPARGDCVLSFKDHGAL
AAAILVPLLLLLLCVACCCCGAGPADARDRAAVPDDDVVARMKHHVRGVLANLSAMMPCF
SLGGYKLPKVTVSHHDTEIPFNPSFIEPPSAAWVSDSSFSSSFDTDNEGPEYSVPPREGV
PLLGGAELQDGVSPLSEALPDPSAFDSEDVSQPFAIPRTSSIAKAKRPSVSFAEGTKFGT
AETPSPGRKPKTPWGPSKLSSPPGDAAAEPPTERPASDCYESPEPLGKGEESHRPSPRAT
PGGRRRMVSSTRHVAQRVEALEAAAKSGSWEAKGKEPNVTTIYMMVGTAGQDPKAEGGGE
GPVQAMLKRLGSLQRGKWAAKEEPKVRRSIEAIQKPPRRALAQRRDSVNSCKQRESVPGA
PAEPSPGKHQHPPGKRESFLLASPSPKSTGAQDGTSDAVGATERGKSPELVLSLETKGQA
AVEEEPKYENVISGSADSPPGHAKEPPATPAAT
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggggagcacccggcccatcctctgcctccagctgtggctgtgggtgcagagctctgcc
caggagctcgatcccgacggcaggaacgtctgcaggctccccgccggcccggcatgctgc
cccggctggaagcaggaagggcgggagtgcacggccgcactgtgcgagggagaggacgcc
tgcggggtggatgaggtgtgcgtgagacccggggtttgcctctgcaaacccggctttttc
ggagcagactgcagttcccgctgccccgagcagtactggggccccgactgcaagcggagc
tgcccgtgccaccccaacgggcgctgcgacccggcgagcgggcgctgcacctgcaacccc
aaccactggggagggctctgccagttcccttgccagtgcggcccccacggccgctgcgac
cccctgaccggcgcctgccgctgcgagccgggctggtgggcacccacctgcaagaagcaa
tgtcagtgcaactccgccagctcccactgcgacccgctcaccggccactgccgctgcctg
ccgggctggtggggcaggaggtgcagcttcaaatgctcctgcaacctctcgccctgcgcc
caggagacgggcaagtgcgaatgcaaggctgggttttgggggccggcgtgccagcggcgc
tgcgactgcttgcacggttcctgcagccccctcagcgggcattgcagctgcagccccggc
taccagggcaggagctgccgggacccctgtccggcggggaaatacgggtctcagtgtgtg
cacagctgtgggagctgcaagcgcagccagccctgctcgcccgtggatggcttctgcctg
gcctgccagcccggctggaacgggaccctctgcaaggagccctgcgcgcccggcttccac
ggtgaggactgcctccagccatgtccccgctgccgccgcggggaggtctgcgacccagag
accgggtcctgcccgcactgcgagcccggctggatgggacccagctgcaacagctcctgc
cccgcgggcaccttcggcgatgggtgccagctcctctgccccgagtgcgttgcgggaagc
tgcgaccccgtgtcaggagcttgcatctgccaggcgggctactggggagccagctgcaac
gacacctgcccggagggatattttggcgtgaactgttcctcgccctgccagtgctcccgg
gggacctgccaccctgcgcggggtgactgcgtgttgagttttaaggaccacggggccctg
gcagccgccatcctcgtccctctcctgctgctgctgctctgcgtcgcctgctgttgctgc
ggagctggcccagcggatgctagagacagggcggctgtgccggatgacgacgtggtggcc
cggatgaagcaccacgtgcggggggtgctggcaaacctcagcgctatgatgccttgcttt
tccctgggtggctacaaacttcccaaagtcacagtttcccaccacgacacggaaatcccc
ttcaaccccagcttcatcgagccgccgtcggccgcgtgggtttcagacagctccttctcc
tcctccttcgacaccgacaacgagggacccgagtactccgtccctcccagagaaggcgtc
ccgctgctggggggggccgagctgcaggacggggtgtcccccctcagcgaggcgctcccg
gacccgtccgccttcgactccgaggacgtctcgcagcctttcgccatcccccgcacctcc
agcatcgccaaggccaagcggccctctgtgtcctttgccgaggggacgaaatttgggacg
gcggagacccccagccccgggcgcaagcccaagaccccatggggcccatccaagctgtcc
tcaccgccgggggacgcggcagctgagccccccactgaacgaccagccagcgattgctac
gagagccctgagcccctcggcaagggggaggaaagccaccggccatcaccccgggccacc
ccggggggacgccggcggatggtctccagcaccaggcacgtggcccagagagtggaggca
cttgaagcggctgcaaaatccggcagctgggaggcgaaggggaaggagcccaacgtcacc
accatctacatgatggtgggaacggccgggcaggaccccaaggcggaggggggtggcgag
ggaccggtccaggccatgctcaagcggctgggcagtttgcagaggggcaagtgggctgca
aaggaggagcccaaggtgaggaggagcatcgaggccatccagaaaccaccccgccgggcc
ctggcgcagcgcagagactcggtgaatagctgcaagcagcgggagagtgtcccgggggct
cccgccgagccgtcccctggcaagcaccagcatccccctgggaagagagagtccttcctt
ctcgcatctccctcgccaaaaagcaccggggctcaggatgggaccagcgatgctgtaggt
gccacggagaggggcaaaagccctgagttagtcctcagcctcgaaacgaagggacaggct
gccgtggaggaagagccgaaatacgagaacgtgatcagcggcagcgccgattcgcccccc
ggccacgccaaggagccgccggccacccctgcggccacctga
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