Calonectris borealis (Cory's shearwater): 142090937
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Entry
142090937 CDS
T11211
Symbol
DDX5
Name
(RefSeq) putative ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142090937 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbor03041
]
142090937 (DDX5)
03009 Ribosome biogenesis [BR:
cbor03009
]
142090937 (DDX5)
Enzymes [BR:
cbor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142090937 (DDX5)
Spliceosome [BR:
cbor03041
]
Complex A
U1 snRNP components
U1 related factors
142090937 (DDX5)
Complex B
142090937 (DDX5)
Ribosome biogenesis [BR:
cbor03009
]
Eukaryotic type
Pre-60S particles
Helicases
142090937 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
142090937
NCBI-ProteinID:
XP_075025611
LinkDB
All DBs
Position
20:4402969..4413399
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AA seq
603 aa
AA seq
DB search
MPGYSSDRDRGFGAPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VVRRTVQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSR
GDRRDRYSAGKRGGFSSFRERENFERNYGALGKRDFGAKTQNGAYSAQSFSNGTPFGNGF
AAAGMQAGFRAGNPAGAYQNGYDQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYPMPTS
YSQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggatagagggtttggagccccccgttttggaggaagt
agaggtggacctctctctgggaagaaatttggaaaccctggggaaaaacttacaaaaaag
aaatggaatttagatgagctgcccaaatttgagaagaacttctatcaagaacatcctgat
gtagttagacgtactgtgcaagaagttgaacagtacagatcaagcaaagaagtcacagtt
aggggccataactgtccaaaaccgattataaacttctatgaagctaactttcctgcaaat
gttatggaagtaattcagaggcagaacttcactgaaccaactgctattcaagcacaaggt
tggcctgttgcattgagtggattggatatggttggagtggcacaaactggatcagggaaa
acactgtcttacttgttgcctgctattgtgcatataaatcatcagccattcctggagcga
ggagatggacctatttgtcttgtgctggcaccaactcgtgaactggctcaacaagtgcag
caggtagctgctgaatatagcagagcatgccgtttgaagtctacatgtatttatggaggt
gctccaaagggaccacaaattcgtgacttggaaagaggtgtggaaatctgcattgcaaca
cctggaagacttatagacttcttagaggctggaaagaccaatctcaggaggtgtacttac
cttgtccttgatgaagctgacaggatgcttgacatgggctttgaacctcagatcagaaaa
attgtggatcagataagacctgacaggcaaactctgatgtggagtgccacatggccaaag
gaagtaaggcagctggctgaagactttttgaaagaatatgtacacatcaacattggtgca
ttagaactaagtgcaaaccacaacattcttcaaattgtggatgtgtgccatgatgtagag
aaagatgacaagcttattcgtttgatggaagaaataatgagtgagaaggaaaataaaaca
attgtttttgtggaaaccaaaagacggtgtgatgatcttaccagaaaaatgaggagagat
gggtggccagcaatgggtattcatggtgataaaagtcagcaggagcgggactgggttcta
aatgaattcaaacatggaaaagcaccaatcctgattgctacagatgttgcatccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatacacattc
tttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgggaggctaat
caagccatcaaccccaaattgcttcagttgattgaagacagaggttcaggtcgttcccga
ggtgatcgacgtgacagatattctgcgggcaaaaggggtggatttagtagttttagagag
agggagaactttgagagaaactatggtgcgctaggaaagagagactttggagcaaaaact
caaaatggggcctacagtgcccaaagtttcagtaatggaactccttttggaaatggcttt
gcagccgcaggcatgcaagctggcttcagggctggtaaccctgcaggagcttaccagaat
ggctatgatcagcagtatggaagtaatattgcaaatatgcacaatggcatgaatcaacag
cagtatgcatatcctgccactggtgctgctcctatgataggttacccaatgccgacaagt
tattctcaataa
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