Calonectris borealis (Cory's shearwater): 142091373
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Entry
142091373 CDS
T11211
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142091373 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbor03041
]
142091373 (PRPF4)
Spliceosome [BR:
cbor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
142091373 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
142091373
NCBI-ProteinID:
XP_075026614
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All DBs
Position
21:6869997..6878351
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AA seq
536 aa
AA seq
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MASVRAPAARGGARPPVRAPAPAEATKSKPAEDSDAPPAKRAPIFYGSLEEKERERLAKG
ESGLLGKEGMKAAIEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDS
EVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQTW
YHEGPRSLKTARLWLANYSLPRAAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCS
QIGDDRPLSYCHFSPNSKLLATACWSGLCKLWSAPDCNLVHTLRGHNTNVGAIVFHPKAT
VSLDKKDVNLASCAADGSVKLWSLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHS
WRLWDLEAQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGH
LKEIYGVNFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVKFEPNHGNFLL
TGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWAAE
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgtgcgggctccggcggcgcgcggcggcgcccgcccccccgtgcgggcccct
gcacctgcggaggccacaaagagcaagcccgcagaagacagcgatgctcctccagccaag
agagcccccatcttttatggcagtttggaagagaaggaaagggagcgtctggcaaaagga
gaatcggggttgttgggaaaagaagggatgaaagctgcgatcgaggctggcaacatcaac
ataagcagtggtgaggtcttcgatctcgaagaccacatgagcgagcggcaggcggaagtg
ctggctgagtttgagcgcaggaagagagcccggcagatcaacgtgtccactgacgactct
gaagtgaaagcctgtttgcgagcactcggcgagcccatcacgctctttggagaaggtcct
gcagaaaggagggagagattaagaaatatcctttcggtggttggcacagatgcattaaaa
aagaccaggaaagatgatgacaggtctaaaaaatccaaagaagagtatcagcaaacctgg
taccacgaaggaccacgcagtctgaaaacagcaaggctgtggcttgctaactactcactc
cccagggcagcgaagcggctagaagaagcccggctgctcaaagagattccggaggcaacc
aggacatcgcagagacaggagctacacaaatccctgcgatccttgaataacttctgcagt
cagattggagatgatcgcccactgtcctactgccacttcagccccaattccaaactcctg
gctacggcctgttggagcggattgtgcaagctctggtccgcgcctgactgcaaccttgtt
cacaccttacgaggacataacaccaacgtaggagcaatagtcttccatcccaaagccact
gtctccctagacaagaaggacgttaacctggcctcgtgtgcggccgatgggtctgtcaaa
ctctggagccttgaaagcgatgaaccagtggcagatattgaaggacacagcatgagagtg
gcacgtgtgatgtggcacccatctgggaggttcctgggtactacctgctatgatcactcg
tggcgcttgtgggacttggaagctcaggaagagattctccatcaggaggggcacagcaaa
ggggtctatgacattgcttttcacacggacgggtctctcgctgggactggtggactggat
gcttttggccgggtgtgggacttgcgcacgggacgctgtatcatgtttctagaaggccac
ctaaaggagatctacggggttaacttctccccaaatggataccacgtcgcaactggcagt
ggtgacaatacttgcaaggtgtgggacctccgccagaggaagtgcatctacaccattcct
gcccatcagaacctggtgaccggggtgaaatttgaacccaatcacggtaacttcctgctc
acaggcgcttacgacaacaccgcaaagatctggacccaccccggctggtcccctttgaag
acgctggcgggtcatgagggaaaggtgatgggactggatatctccctcgacggccagctg
atagcgacctgctcctacgacagaaccttcaagttgtgggcagcggagtag
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integrated database retrieval system
