Calonectris borealis (Cory's shearwater): 142091680
Help
Entry
142091680 CDS
T11211
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cbor03009
]
142091680 (LTN1)
04121 Ubiquitin system [BR:
cbor04121
]
142091680 (LTN1)
Enzymes [BR:
cbor01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142091680 (LTN1)
Ribosome biogenesis [BR:
cbor03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
142091680 (LTN1)
Ubiquitin system [BR:
cbor04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142091680 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
zf-ANAPC11
FANCL_C
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
142091680
NCBI-ProteinID:
XP_075027172
LinkDB
All DBs
Position
1:complement(115674951..115706938)
Genome browser
AA seq
1770 aa
AA seq
DB search
MGGKNKQRTKGNLRPSSSGRAAELLAKERGTVPGFIGFGTSQSDLGYVPAVQGAEEIDSL
VDADFRMVLRKLSKRDITTKLKAMQEFGTMCKEREAEVVKGVLPYWPRIYCKISLDHDRR
VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDSYSPAASAAKLAFEKAFPSSKQP
EALAFCKDEILNVLQDHLLKETPDTLSDPQTVPEEEREAKFFRILTCSLLALKKLLSMLP
KKEMHSLEGKLMSLLSQNKFWKYGKHSLPQVRSAFFELASAFCQYLPELVKTEAPRVCPA
VLLSIDDSDAVVCPALWEAVLYAIATIEDCWSHVNAKKGVLPKLWTVLREGGRGLATVIY
PNLLPFISKVPPGIAEPKLEYFRTFFSSIIQGLSSERAIASPSESSAIITTFMECLRFAI
LQKVDEEDDQRQIHQMLIYDQLIPLTDAVLKEPRLQNGPLFYQIAEMLSSWEAKAELSND
DGTDEVFQKLLSNFWDHLLKMCVHHVDTLDADEKSLFAVSGMLEILQNPKSATKPNNRKS
LKIRFTDEDESERNTENGKLTEVINSDSEIQADLQHSSILRKEPLENLVCSLAELSIVYV
NEQKSEQHLKFLSALLNSFSSNRVFQVLLEQGNDASSAQAESQNEIKTGHESPSVQFLYM
NLITWLKEDWRKDTHFLVDILYSVLNCCNSNDERKIILDDLTKMDLKWIIFLQIIQKACS
STTKLSLVSDWLKGDTLGERLVMLADDLCHLGLKPVAASSELSSSERWTLLSLVLSQHIK
NESLISETFVERIIDKLQAALSKAKDLSEAGNTEPSVSFICDVASSFFSSVKGCLLMPSS
EDLLLTIFQLCAQRQDATHLTDLLVCKLKHTWMSGVNSLVRQLRSMQKQSTFLHKSALWV
KNQIQSSSLDVKSLQVLISAVSDLLSKLMEADGQSGYLVGAYVEHVTPNKTEWGKLHESL
STEWIHKPLLEGRLSMNCEPLGSCVKLCGTTKLPGHLCTSALLSKMVLLVLENDIIHGND
DAERKKIDNIIAELLYSLQWIEELENPPYLLLEYLHMLEEMHITYEKFSTLSNTTSLQQT
IFDRSEEHGRLWSLTMAKVIHTENTVSCEMKQLFQTTEGFLPLTEGRLHTLQCLSPFLIE
EEKKELVFHCVAKLMTCTQTELSSTDGGFGCLSILNSCLNDRSIDCDHLLPGILKIIISW
KNDNEDRFLFSCNLKETSAQLLGFNIEMIRYLPVLLKHSTAPLADNEWDFIMCSMLAWLE
TTSENHSLYHVPLVQIFACVSCDLASALSAYFEAAAPETTENLPVNLISEWKEFFSEGIH
NLLLPLLVKVTGETKNASEGSFQNSVLTSLGEALTYISKDQLLNHKLPAKFVAGQKTNLP
DKLQTLLNTLSPLLLFRARPVQISVYHMLYKLMPELPKFDDEDLKSYGDEEEELALSPPA
ALMSVLATQELLLENILECIPVGEFAVIQPLSDEFCLVLGYLLTWKLTLAFFKAASSQLR
VLYSQHLRRTKSLNKLLYHLFRLMPENPVFSGPTSEVPNKDTKTFFTEELHLDVKGTGVL
SSQIPHLACSVYHITLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSSVLSSQEISSVQT
STQLFNGMAVKARSAAREVIATYSVDDIFIELIIQLPSNYPLGSITVESGKRVGVAVQQW
RNWMLQLSTYLTHQNGSIMEGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRT
CKKKFHSACLYKWFTSSNKSTCPLCRETFF
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggggggcaagaacaagcagcgaaccaagggcaacctgcggccttctagcagtggccga
gctgcagagctcctcgccaaagaacgtggaacagtgcctgggtttattggctttggaaca
tctcagagtgatctaggatatgttcctgcagttcaaggagcagaggaaatagacagcctt
gtggatgctgattttcgaatggtgttgcgaaaactttctaaaagggatatcacaacgaaa
ttaaaagctatgcaagagtttgggacaatgtgcaaggaaagagaagcggaagttgtgaaa
ggtgttcttccttactggccaagaatttattgtaaaatctcactagatcatgatcgccgt
gttcgagaagcaactcagcaatcttttgagcaactgattctcaaagtaaagaaacactta
gctccttacttaaaaagtatcatgggatactggctgattgctcaatgtgacagttactcc
cctgctgcttctgctgcaaaattagcttttgaaaaagcttttccttcaagcaaacaacct
gaagccttagcattctgtaaagatgaaattctgaatgtacttcaagatcaccttctgaaa
gaaacacctgatacactcagtgacccccaaactgtgccagaggaagaaagggaagccaaa
tttttccggattctgacctgttccttgttagctttaaagaagttgcttagcatgttgcca
aagaaagagatgcattcattggaaggaaagttaatgtcacttctgtcccaaaacaaattt
tggaaatatggcaaacacagtctaccacaggttcgctcagctttctttgagctggcttct
gctttttgccagtacttgcctgagctggtgaaaactgaagcaccaagagtttgtcctgct
gttcttctcagcattgacgacagtgatgcagtggtgtgtcccgctctttgggaagctgta
ctttatgctattgccactattgaggactgttggagtcatgtaaacgccaaaaagggagtt
ctaccaaagctatggacagtgcttcgagaaggtggacgaggactagctactgttatatac
ccaaatctcttgccgttcattagcaaggtacctcctggcattgcagaaccaaagctggaa
tatttcagaacttttttcagctctataattcaagggttgtcaagtgagcgagcaatagcc
agcccttcagaaagttcagcgattataactacatttatggaatgtctgcgctttgccata
ctacagaaagtagacgaagaagatgaccaaagacaaattcatcaaatgcttatatatgac
cagctaattcctcttaccgatgctgtacttaaggagcccaggttacaaaacggaccgtta
ttttatcaaatagcagaaatgctgagctcctgggaagctaaagcagaactctccaatgat
gatggcacagatgaagttttccagaaactgttgtcaaatttttgggaccatcttttaaaa
atgtgtgtacatcatgttgatacgttggatgctgatgagaaatcattgtttgccgtatct
ggtatgctagaaattcttcagaatccaaagagtgctacaaaaccaaacaacagaaaatct
ctaaaaatcagatttacagatgaggatgaatctgaaagaaacacagagaatggaaagctc
acggaagtgataaatagcgactctgaaatacaggctgacttgcagcatagttcaattcta
agaaaagaacctttagagaatttagtctgcagccttgctgaactgagtattgtgtatgtc
aatgaacagaagtcagaacagcatttgaaatttctctctgccctgcttaactctttttct
tcaaacagagtttttcaagtacttttagagcagggaaatgatgcaagctctgctcaagct
gaatcccaaaacgaaattaaaactggtcatgaaagtccatctgtacaatttctgtatatg
aatttaataacttggctgaaagaagactggaggaaggacacccattttctggttgatatt
ttgtacagcgtgcttaattgttgcaacagtaatgatgaaaggaaaatcattcttgatgat
ttaacgaagatggatctgaaatggattatttttcttcagataattcaaaaggcatgctca
agcacaacaaaactttccttagtctctgactggctgaaaggagatacacttggagaaaga
cttgtaatgctggcagatgatctgtgtcatctgggtttaaaacctgtagcagcctcatca
gaattgtcctcttcagaaaggtggaccctcctgagcttagtgttgtcgcaacacattaag
aatgaatctttgattagtgaaacttttgttgaaaggattattgataaacttcaagcagct
ctgtctaaagctaaggatctttcggaagctggaaatactgaaccatcggtatcttttatc
tgcgatgtagcctcaagctttttcagctcagttaaagggtgtttactgatgccatcctca
gaagacttgctgcttaccatcttccagttgtgtgctcagaggcaggatgctacgcactta
acagatttacttgtatgtaaattaaaacacacttggatgtctggtgtaaattcacttgtg
cgtcaacttcggagtatgcagaaacagagtacctttttgcataaatctgcactgtgggtc
aagaatcaaattcagtcttcctctttggatgttaaaagccttcaggttttgatctctgca
gttagtgatttgttgtctaagcttatggaagctgatgggcagtctggatatctcgtggga
gcttatgttgagcatgtcacgccaaacaaaactgagtgggggaaattgcacgagtctcta
tccactgagtggattcacaaacctcttttggaaggaaggcttagtatgaattgtgaacct
ttaggatcatgtgtcaagctgtgtggcacaactaaacttccaggccatctgtgtacttca
gccttattaagtaaaatggtgctacttgtattggaaaatgatataatccatggaaatgat
gatgctgaaagaaagaaaattgacaatataattgcagagctgttgtactcattacaatgg
attgaagaattggagaatcctccctatctgcttctggaatatcttcatatgttagaagaa
atgcacatcacatatgagaagttcagtacacttagtaatacaactagccttcagcaaaca
atatttgatagatcagaagaacatggaagactctggtccttaaccatggctaaagtgatt
catacggaaaacactgtatcctgtgagatgaaacaactttttcagacaacagaagggttt
ctgccattaacagagggcagattgcatacacttcagtgtctatcaccttttttaattgag
gaagaaaagaaagaacttgtcttccactgtgtggccaaacttatgacgtgcacacagaca
gagctttccagcactgacggaggatttgggtgtctttccattttgaactcctgcttgaat
gatagaagtattgattgtgatcacctactacctggaatactaaaaatcataatatcttgg
aaaaacgataatgaggaccgctttctctttagctgcaatctgaaagaaacaagtgctcag
ttgctcggtttcaacatagagatgatccgttatcttcccgtgttgctgaagcattccaca
gctcctttggccgataatgaatgggactttatcatgtgctccatgctggcttggttagag
acaacaagtgaaaaccattcgctttatcatgtcccgcttgtgcagatttttgcttgtgtc
agttgtgacttggcatctgcccttagcgcttactttgaagctgcagctcctgaaactact
gaaaatcttcctgtgaacttgatcagtgaatggaaagaattcttttctgaaggaattcac
aatttgctgttacctttgttagtgaaagtcacaggagaaaccaaaaatgcatctgaaggc
tcctttcagaactctgtgttaacatctttgggtgaagccctaacgtacatctcgaaggac
cagttattaaaccataaattaccagcaaagtttgttgcaggccagaaaacaaatcttcca
gataaactccagactctactaaatacattgtctccattgttgcttttccgggctagacct
gtacagatttctgtctaccatatgttgtataaattaatgcctgaattgcctaaatttgat
gacgaagatctcaaatcttatggtgatgaagaggaggaattggcattatcacctccagcg
gctcttatgtctgtcctggccactcaagaactcttgctagaaaacatcctggaatgcatt
ccagttggagaatttgcagttattcagcccctgagcgatgagttctgccttgttctagga
tatcttctcacttggaagttaacattagctttcttcaaagcagcttcttctcagctgcga
gttctctactcacaacatcttagaagaactaaaagcttgaataaactgctttatcacttg
ttcagacttatgcctgaaaaccctgtcttttctgggccaacttcagaagttccaaataaa
gacacaaaaaccttctttactgaagagcttcatttagatgtcaaaggcacaggagtcctc
tcatcccagattccgcacttggcctgctctgtgtaccatataacactgaaagacctgcca
gccatggtcaggctttggtggaatagctgtgagaaacgtgtcttcaatgttgtagataag
tttacaagcaaatatgtcagcagcgtgctttcttcgcaggaaatatcttctgttcagact
agcacacagttatttaatggcatggcggtaaaagctcggtctgcggcacgggaagtcatt
gctacctattcagttgatgacatatttattgaactaataatacagcttccatcaaattac
ccactgggatccataacagttgagagtggaaagagggttggtgtggctgtacagcaatgg
cgcaattggatgctacagttaagcacgtatcttacacatcagaatggaagtattatggaa
ggcttatctttgtggaaaaataatgtggataaacgttttgagggcgttgaagattgcatg
atctgtttctcagtcattcatggttccaactattctcttcccaaaaaagcttgcagaaca
tgcaagaagaagtttcattcggcttgcctgtacaaatggttcacatccagcaacaaatcc
acctgtccgctctgtcgagagacatttttctga
DBGET
integrated database retrieval system
