Calonectris borealis (Cory's shearwater): 142091852
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Entry
142091852 CDS
T11211
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cbor
Calonectris borealis (Cory's shearwater)
Pathway
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142091852 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbor03041
]
142091852 (DDX42)
Enzymes [BR:
cbor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142091852 (DDX42)
Spliceosome [BR:
cbor03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
142091852 (DDX42)
Complex B
142091852 (DDX42)
Complex C
U2 SnRNP specific factors
142091852 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
142091852
NCBI-ProteinID:
XP_075027358
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All DBs
Position
22:7238937..7258360
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AA seq
958 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAAAAAAKGVPGFTSSGNLSSVPT
FPSVGVQGFNNTNASANNREGIGGSSSTGVAAAGGGGGSGGSGSGGSGSVGGSGGGGIVR
ERYNDNRNSRHNEVPRRGEGGGRYNDVQRHGEGGGRHSDAYRHGEGRHGDNHRHSESRHF
ADVGSGNRNNGDSRNSNEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttggttttggtggattcgcc
ataacacctggaaagaaagaggagcctaagctctctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcaaaatcaggacctcctcagctgccttctttctat
aaaattgggtcaaagcgggcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgtcgaattgccgtacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatatccaccgtttgagaagaatttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctaaat
ctccgggtctccggtgctgctcctccgaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcaaattaggaaatccgagtacacccagcccactcctatacag
tgtcagggtgttccagttgcactaagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggcccatgttgattcacatcatggatcagaaggag
cttgaaccgggggatggtcccattgcagtcatcgtatgtccgaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcgtataatctacgctctgtcgctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctacaggagggggcagagatagtt
gtctgcacaccaggtcgtttaattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatgggctttgaatatcag
gtcagatcaattgcaagccatgtacgtcctgacagacagactctcttgttcagtgccact
ttccgtaagaagattgagaaattggctcgagatattctgatcgaccccattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaatcgtggagattttcccctct
ggccctagcaaatggaactggctgactcgacgccttgtggagttcacatcttctgggagc
gttctcctgttcgtcactaagaaggcaaatgcagaagagctggccaataaccttaagcag
gaggatcataatctggggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaagggaatcccgatactggtagctactgatgtggcagctcgt
gggttagatattccttccattaagactgtgatcaattatgatgtggctcgggacatagat
acgcacacccatagaattggtcgtactggcagagcaggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaactttgctggtgatcttgtcagaaatctggaaggcgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaatccgtggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatac
cgtgaacgtcctggtctgggatcagaaaattctgaccgtggaaacaacaacagcgtgatg
agtaactacgaggcatacaagccatccactggggcaatgggagacagacttacagcaatg
aaagcagcttttcagtcccagtataagagccactttgttgctgcaagcttaaataatcaa
aagactggtagctccgctgctggtgctagcggctggaccagcgctgggagcttgaactca
gtaccgacgagttcagcacagcaaaatgctgcaaatcctgacagcccaattgcagccgct
gcagcagcaaagggtgttccaggtttcaccagctcggggaatttgagtagcgttcccacc
tttccaagtgtcggagtacagggcttcaacaacacaaacgccagcgccaacaatcgagaa
ggcatcggcggcagcagcagcactggcgttgctgctgctggcggcggtggtggcagcggc
ggcagtggcagtggcggcagtggcagtgttggtggcagcggtggtggcggcattgtcaga
gaacgatacaacgacaaccggaacagtcgccacaacgaggtcccgcgacgtggagagggt
ggtggtcgctacaatgatgtgcaacgccatggagaaggaggcggtcgccacagtgacgct
taccgccacggagagggccgacacggagacaaccatcgccacagtgaaagccggcacttc
gctgacgtgggcagtggcaatcgcaataacggtgatagcaggaatagcaacgaaggtagg
aacaacgagaacaggaatggtgagaacaggaaggatgccaacagccgagacaacaagaca
gatggttttgctgtcccagagcccccaaaacgtaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
