Calonectris borealis (Cory's shearwater): 142093917
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Entry
142093917 CDS
T11211
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03013
Nucleocytoplasmic transport
cbor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142093917 (UPF1)
03015 mRNA surveillance pathway
142093917 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbor03019
]
142093917 (UPF1)
Enzymes [BR:
cbor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142093917 (UPF1)
5.6.2.5 RNA 5'-3' helicase
142093917 (UPF1)
Messenger RNA biogenesis [BR:
cbor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142093917 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
142093917 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
142093917
NCBI-ProteinID:
XP_075031682
LinkDB
All DBs
Position
28:complement(5016433..5039901)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAVQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactctc
cccagccagacccaaaccccgcccgggcccgggcaggcggggccgggacagggccaaggg
ccccccggagcggttcaggggccgccaggaccgatcgaagcacaggttaatggacctgat
ggcattctacagaatggagctgtggatgataacgtggctaaaaccagccagcttctggca
gaattgaattttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgcgtggtttactgtaacaccagcaaa
aagtggttctgtaacgggcgtggaaatacctctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcatgg
ctggtaaagattccatctgaacaggaacagttgagagcacgtcagattacggctcaacag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttagaa
aagcctggtgttgatgaagaaccacagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacggtcagatgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttatggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcgcctgtggaagttactcataacttccaagtggattttgtatggaagtctact
tcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcagtgtct
gggtacatctatcacaaactgttaggtcatgaggtagaagatgtaatcattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtactggaaaa
acagtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctccgagtaatatagctgtagatcagttgactgagaagatccatcaaactgga
ctgaaagtggttcgcctgtgtgctaaaagtcgtgaggcaatcgactctcctgtgtccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttatcgtgcactg
aaacgaacagcagagcgtgaattacttatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgatgaaagc
acacaagctactgagccagagtgcatggtgcccgttgtcctgggagcaaaacagcttatt
cttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgcaaaggct
ggcctgtctcagtctctctttgagaggcttgtggtgctggggattcgccccattcgcctg
caagtgcagtatcgcatgcatcctgcgctcagtgcttttccatccaatatcttctatgag
ggttcactccagaatggtgttactgcagcggaccgtgtgaaaaaaggttttgatttccag
tggccacagccagataagccaatgtttttctatgttacacaaggacaggaagaaattgcc
agctcaggcacctcttacttgaacaggacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggcattattactccttatgaaggt
caacgatcctatctggtgcagtacatgcaatttagtggttccttgcatacaaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggacgagaaaaggactttattatc
ctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgaccccaggcgt
cttaacgtagctcttacaagagcaaggtatggagtaattattgttgggaacccaaaagcg
ctgtctaaacaaccactctggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactcaataacctccgggaaagccttatgcagttcagcaagccccggaaa
cttgtcaataccatcaacccaggcgcccgcttcatgactactgccatgtatgatgcacgt
gaggctattattccaggatctgtctatgaccgaagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgattagtgctggccccagccacgtcactgct
atgaacattcctatccctttcaaccttgtgatgccaccgatgccaccaccgggatacttt
ggccaggctaacggaccagccgcaggacgtggggcgccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgctttgggattcctggaactagtcagtcaaaccttccaaatagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccgctgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
