KEGG   Calonectris borealis (Cory's shearwater): 142094270
Entry
142094270         CDS       T11211                                 
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
cbor  Calonectris borealis (Cory's shearwater)
Brite
KEGG Orthology (KO) [BR:cbor00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cbor04131]
    142094270 (COPA)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cbor04147]
    142094270 (COPA)
Membrane trafficking [BR:cbor04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    142094270 (COPA)
Exosome [BR:cbor04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   142094270 (COPA)
  Exosomal proteins of bladder cancer cells
   142094270 (COPA)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_RFWD3 WD40_MABP1-WDR62_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 142094270
NCBI-ProteinID: XP_075032339
LinkDB
Position
29:complement(1249682..1271086)
AA seq 1224 aa
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDRLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDHNAKLLQPPAPVMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVDAGEGFGEEGLGKGQEEGGGWEVEEDLDLPPELDVPAGPAG
AAEDGFFVPPTKGASPAQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTNFGPYKQLFL
QTYARGRTTYQALPCLPTMYGYPHRNWKEAGLKNALPAVGLKLNDLIQRLQLCYQLTTAG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKETLEQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFHGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgctgaccaagttcgagactaagtcggcccgggtgaaagggctcagctttcaccccaag
cggccgtggatccttaccagcctgcacaatggcgtcatccagctgtgggactatcggatg
tgcacccttatcgacaaattcgacgagcacgacggacccgttcgaggtattgatttccac
aaacagcagcctctgtttgtttctggaggtgatgattacaaaataaaggtctggaactac
aaattgcgccgttgtctcttcactctgctcgggcacttggattatattcgcactaccttc
ttccaccacgaatatccctggatcttgagtgcttctgatgaccagaccattcgggtttgg
aactggcagtccagaacttgtgtttgtgtgctgacaggacacaaccactatgtgatgtgt
gcccagtttcacccctctgaggacctggtagtgtcagccagcttggatcagactgtgcgc
gtttgggatatttctggcctaaggaagaagaacctgtcccctggagctgtggagtcagat
gtcaggggaataacgggggtggatttgtttgggacaacagatgcggttgtgaagcacgtt
cttgagggccatgatcgtggggtgaactgggctgccttccaccccacaatgccacttatt
gtgtcgggagctgacgatcggcaagtgaagatctggcggatgaatgaatcgaaggcctgg
gaggttgacacttgccgggggcattacaacaatgtctcgtgcgctgtctttcacccgcgg
caggagctaatcctcagcaattcggaagacaagagcatccgtgtctgggatatgtctaaa
cgcacgggtgtccagacctttcggcgtgatcatgatcgcttttgggtattggctgctcat
cccaacctcaacctctttgctgcaggccatgacggtggcatgattgtgttcaaactggag
cgcgagaggcctgcttatgctgtgcatgggaacatgctctattatgtgaaggaccgtttc
ctccgccagcttgatttcaacagttcaaaagacgttgctgtcatgcagctgcgaagtggt
tcgaagttccctgtgttcaacatgtcgtacaacccagctgagaacgctgtcctcctctgc
acaagagccagcaacttagagaacagtacttatgacctatacaccattcccaaggatgca
gactcccagaatccggatgcccctgaagggaaacgttcctccgggctaacagctgtgtgg
gtagctcgtaaccgctttgcagtcctggatcgcatgcattcgatcctaatcaaaaacctg
aagaatgagatcacgaagaaggtgcaggtgccgaactgtgatgagattttctatgctggc
acagggaacctgttactgagagatgcagactccatcaccctctttgacgtgcagcagaag
cgaactctggcctcagtgaagatctccaaggtgaaatatgtcatctggtcggctgacatg
tcccatgtagccctgctggctaagcacgccatcatgatctgcaacagaaagctagagtca
ctgtgtaacatccatgaaaacatccgtgtcaagagcggtgcctgggatgaaagtggtgtt
ttcatctataccaccagcaatcacatcaaatacgctgtcaccacaggggatcatggaatt
atccgcaccctggacctgcctatctacgttacccgcgtgaaggggaacaacgtgtactgc
ctggacagagagtgccgccccagggtcctcaccatcgatcccacagaattcaaattcaag
ctggcattgatcaacagaaagtacgatgaggtgctgcacatggtgaggaatgctaagctt
gtgggccagtccatcattgcctacctgcagaaaaagggctacccagaagtggccctgcac
tttgttaaggatgagaagacccgtttcagcctggcactggagtgtggcaacattgagatt
gctctggaagcagccaaagctctggatgacaagaattgctgggagaaactgggagaagtg
gcgttgctgcagggaaatcaccagattgtggagatgtgctaccagcgcaccaagaacttt
gataggctctccttcctctatctcatcactggcaatctggagaagcttcggaagatgatg
aagatagctgagatccgtaaagatatgagtggccactaccagaatgccttgtatctagga
gatgtggcagagagagtgaggatcctgaagaactgtgggcaaaagtccctggcctatctc
acggctgcaactcatggcctggatgaggaagctgaaagcctgaaggaaacatttgatcct
gaaaaggaaacgattccagacatcgatcacaatgcaaagctgctgcagcctcctgctcct
gtcatgcctctggataccaactggccattgctgactgtctccaaggggttcttcgaagga
acaattgctagcaaaggcaaagggggtgccttggctgctgatattgatatcgacactgtt
ggcaccgaaggctggggagaagatgcagagttgcagctggatgaagatggctttgtggat
gctggagagggctttggagaggaaggcctaggtaaaggacaggaagaaggaggtggatgg
gaagttgaagaagatttggatcttccccctgaactggatgttcctgctggtccagcagga
gcagcagaggatggattctttgtgccacccaccaagggtgccagcccagctcaggtgtgg
tgtaacaattctcagcttcctgttgaccacattctggcaggctcctttgagacggcaatg
agactccttcatgaccaggtaggagtaacaaacttcggaccctacaagcagctgttcctg
cagacctatgcccgtggccgtacgacctaccaagccctgccgtgtctccctaccatgtat
ggatacccacatcgcaactggaaagaagctggcttgaagaatgccctccctgccgttgga
ctgaaactcaacgacctgatccagcgcctgcagctctgctaccagctcactacggctggc
aagtttgaggaggccgtggagaagttccgctccatcttgctcagcgtgcccttgctggtg
gtggacaacaagcaggagattgctgaggcccagcagctgatagccatttgccgcgagtac
attgtcggactctcgatggagatcgagcggaagaagctgcccaaagagaccctggagcag
cagaagcgaatctgcgagatggctgcctatttcacccactccaacctgcagcccgtccac
atgatcttggtgctgcgtactgcgctcaacctctttttcaaactcaaaaacttcaagaca
gctgctacttttgcccgtcggctgctggagctgggtccaaagcctgaggtggcccagcag
actcgcaagatcttgtcagcgtgtgagaagaatcccactgacacctaccagctcaactat
gacatgcacaaccccttcgacatctgtgcagcctcttaccgacccatctaccgtggcaaa
cccgtggagaagtgtccactcagtggagcctgctactgccccgagttccatgggcagatc
tgccgcgtcactacggtgacggagatcggcaaagatgtcatcgggctgcggatcagcccg
ctccagttccgctag

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