Candidatus Viadribacter manganicus: ATE48_02475
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Entry
ATE48_02475 CDS
T04422
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbot
Candidatus Viadribacter manganicus
Pathway
cbot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE48_02475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbot03019
]
ATE48_02475
03400 DNA repair and recombination proteins [BR:
cbot03400
]
ATE48_02475
Enzymes [BR:
cbot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATE48_02475
Messenger RNA biogenesis [BR:
cbot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATE48_02475
DNA repair and recombination proteins [BR:
cbot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ATE48_02475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ANP44868
UniProt:
A0A1B1AE81
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All DBs
Position
477252..479072
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AA seq
606 aa
AA seq
DB search
MADLTAARETLQRVFGHDDFRGLQSDVIAEVLDGRDVMAVLPTGGGKSFCYQIPAILRPG
VGLVVSPLIALMQDQVAALRAAGVAAARLDSTLDRDARREWLSAAREGKLDLLYVSPEGL
FANGFLDFLEQCPIALIAIDEAHCVSQWGHDFRPDYRALGQLADRFASVPRMAVTATADL
KTQADIRTQLRLENAKSFIASFDRPNLVLAAERKGPKPQDRISDLVRARRGKSGIIYAAT
RDNVEKTAANLAAQNIPALAYHAGLDAKLRADRQHRFQEEDDVVMVATIAFGMGVDKPDV
RYVIHADSPKSIEAYWQEVGRGGRDGDTAEGVCIYSAADLRRAIMFANQSSAAEQVKAVQ
IKKARQLFAFLDGLTCRRGGVRRYFGEENVEPCGVCDICTDPPQSIDATEMAAKAISAVM
RMEQRFGRGRVVSHLIGKASDSLDEQFSTRSTFGIGADQHESVWRNVIEHLLFEGVLSEG
DGERPTLSIGDDEAVRAIFRKERQVRIREAAKPERRSKAGRESKAAAKAGFIGADAKLFE
ALKGWRRETASANGVPPYVIFHDATLAAMVQAKPSDLAGLGRVSGIGEAKLKKYGAEVLA
VLIAGC
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggccgatctcactgccgcccgcgaaacgcttcagcgcgtgttcggccatgacgatttt
cgcgggctgcagtcggacgtcatcgccgaagtgctcgatggccgcgatgtgatggccgtg
ctgccgacaggcggcggcaagagcttctgctatcagatcccggcgatactgcgccccggc
gtcgggctcgtcgtgtcgccgctgattgcgttgatgcaggatcaggtggcggccttgcgc
gcggccggcgtcgcagcggcacggttggattcgacactggatcgcgatgcgcgtcgcgag
tggcttagcgctgcgcgcgaaggcaaactcgatcttctgtacgtttcgccggaaggcctc
ttcgcaaacggcttcctcgattttcttgagcaatgtccgatcgcgctgatcgcgatcgat
gaggcgcactgcgttagccaatggggccacgatttcaggccggactaccgcgcccttggg
caattggcggatcgctttgctagcgtcccgcgtatggcggtcacggcgactgcagaccta
aagacgcaggcggatattcgcacacagctgcgactcgaaaacgccaagagcttcatcgct
tcgttcgatcgaccgaacctcgtgctcgctgccgagcgcaaaggccctaaaccacaggat
cgaatttcagatctcgtgcgcgcgaggcgggggaagtccggcatcatctatgccgcgaca
cgcgacaacgtggaaaagaccgcagcgaaccttgcggctcagaatattccggcgctcgcc
taccacgcagggctggatgcaaagctgcgcgcggatcgtcaacatcgctttcaggaagaa
gacgatgtggtgatggtcgcgaccatcgcattcggcatgggcgttgataagcccgacgtg
cgctatgtgatccacgcggattcacccaagagcattgaagcctattggcaagaggtcggg
cgcggcggacgcgacggcgacaccgccgaaggggtttgcatctacagcgccgccgatttg
cgccgcgccatcatgtttgcgaaccaatcgagcgcggccgaacaagtgaaagcggtgcag
atcaagaaagcacgccagcttttcgccttcctcgacggcttgacctgcaggcgcggtggt
gtgcggcgctatttcggcgaggagaatgtcgagccgtgcggggtttgcgatatctgcacc
gatccgccccaatccatcgacgcaacggagatggcggcaaaggcaatttccgcggtgatg
cggatggagcagcgctttggccgtgggcgcgtcgtcagccatctcatcggcaaggcaagc
gacagcttggatgaacaattctcgacgcgctcaaccttcggcattggcgcggatcaacat
gagagcgtgtggcgcaacgtgatcgaacatctcttgttcgagggggtgctgagcgaggga
gatggagagcgcccgacactatcgatcggagatgatgaagccgtgcgcgcaatcttccgc
aaggaacggcaggtgcgcatccgagaagccgcaaagccggagcggcgcagcaaggcgggc
cgcgaaagcaaggcggcggccaaagccggctttatcggcgccgatgcgaaattgttcgag
gcgctgaagggctggcgccgggaaaccgcgagcgcgaacggcgtgccgccgtacgtcatc
ttccacgacgcaacgctggcggcgatggtgcaagccaaaccctcggacttggccgggctc
ggacgcgtgtccggcatcggcgaagcgaagctcaagaaatacggcgccgaagtgctcgcg
gtgctgatcgcgggctgttga
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