Candidatus Viadribacter manganicus: ATE48_02525
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Entry
ATE48_02525 CDS
T04422
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbot
Candidatus Viadribacter manganicus
Pathway
cbot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE48_02525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbot03019
]
ATE48_02525
03009 Ribosome biogenesis [BR:
cbot03009
]
ATE48_02525
Enzymes [BR:
cbot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATE48_02525
Messenger RNA biogenesis [BR:
cbot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATE48_02525
Ribosome biogenesis [BR:
cbot03009
]
Prokaryotic type
rRNA helicases
ATE48_02525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
ThylakoidFormat
Motif
Other DBs
NCBI-ProteinID:
ANP44877
UniProt:
A0A1B1AE95
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All DBs
Position
489731..491611
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AA seq
626 aa
AA seq
DB search
MTSPQITVSALARALEKRGYETLTPVQSAILARELRDADLMVSAQTGSGKTVAFGLALAA
TLLGKEDRFEKARDPLALIIAPTRELAMQVKAEIQWLYAEAGGVVASCVGGMDARDERRA
LDRGAHIVVGTPGRLVDHLHRGSLVLNSLKAVVLDEADEMLNLGFREELETILDTAPAER
RTLMFSATMPRAIATLAGKYQRDAQRVNTISTAKQHSDIEYLALTTGAHDVENAIFNVLR
YHDAANALVFCGTRAAVTHLQSRFSNRGFSVVALSGELSQKERTHALQALRDHRANVCIA
TDVAARGLDLPDLDLVIHADLPKNPEALLHRSGRTGRAGRKGTSVLVVPYPARRRTERLL
RDAKIEAHWSEPPSADDVKRRDDQRLIEAPVFNEPINDSERGIISALLERHDVDQIAAAF
ARLYRKGQPAPEDLMAPPAGAHPARPEPRPQGFEQSAWITLTVGYAQKAEPRWLIPMLCK
AGGITKRDIGTIRIEDRVTHVELNAAVAEGFFTHLDAGGRLEKNIIAMPMREQEQARPQR
SERPQRQERFERQERPQRPERKQHQERPERQERQERQERQERPAAVRPGRKERQQAQAKR
HGKPPAGKHPAGGKPHKTKKTWHPAD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacctcagatcacagtctctgcccttgcacgcgcgctcgaaaagcgcggctat
gaaacgttaacgccagtccaatcagccatcttggctcgggaactgcgcgatgcggacctc
atggtttccgcgcaaacgggctcaggaaagacagttgcgttcggactcgcactggctgca
acgttgctcggcaaggaagaccggttcgaaaaagcacgcgatccgctggcgctcatcatc
gcgccgacgcgcgaattggcgatgcaggtgaaagcggaaatccaatggctctacgctgaa
gctggcggcgttgttgcttcttgcgtcggcggcatggacgcgcgcgatgaacggcgcgcg
ctggatcgcggcgcacacattgtcgtcggcacgccgggccgtttggttgaccacctccac
cgtggctcactggtgctcaatagcttgaaagccgtcgtgctcgacgaagctgacgagatg
ttgaatttgggcttccgcgaggaactcgaaaccattctcgacaccgcacccgcagagcgc
cgcacgctcatgttctcggcgacgatgccgcgcgcgatcgcaacgcttgctggcaagtat
cagcgcgacgcccagcgggtgaacacgatcagcaccgccaagcagcacagcgacatcgaa
tatcttgcgctcaccaccggcgcgcacgatgtcgaaaacgccatcttcaacgtgctgcgt
taccacgacgccgcaaacgcgcttgtcttttgcggcacgcgcgcggcggtcacccacctg
cagagccgcttcagcaaccgcgggttttcggttgtcgcgttatcgggcgaactcagccag
aaagagcgcacccacgccttacaagccttgcgcgatcaccgcgccaatgtttgcattgca
acggacgtcgcggcgcgcgggctcgatctgcccgatcttgatctcgtcatccacgcagat
ttgccgaagaaccccgaagcgctcctgcatcgcagcggccgcaccggacgcgccggacgc
aaaggcaccagcgttctcgttgtgccctatccggcgcgccggcgcacagagcgcctgctc
cgcgacgccaagattgaagcgcattggagcgagccgccgtccgccgacgatgtgaaacgc
cgcgacgatcagcgcctaattgaagcccccgtcttcaatgaaccgatcaacgatagcgaa
cgcggcatcatctcagcgctcttggagcgccacgatgtcgatcagatcgcggcggcgttt
gcgcgactctatcgcaaaggccaaccggcgcccgaggatttgatggcgccgccggcgggc
gctcatccggctaggcctgagccacgcccgcaaggctttgagcaaagcgcttggatcacg
cttacggtcggttacgcgcagaaggcggagccgcgctggctcatccccatgctgtgcaaa
gccggcgggattaccaagcgcgacatcgggaccatccgcattgaagaccgcgtcacgcac
gtcgagctgaacgcggctgttgcagagggctttttcacgcaccttgatgcgggcggacgg
cttgagaagaacatcatcgcgatgcccatgcgcgagcaagagcaggcgcgcccgcaacgc
agcgaacggccacaacgccaggagcgttttgagcgccaagaacggcctcaacgtccagag
cgcaagcaacaccaagaacgtccagagcgtcaggagcgtcaggagcgtcaggagcgtcag
gagcgcccggccgccgtgcgccccggccgcaaagagcgtcagcaagcccaggccaaacgg
cacggcaaaccacccgccggcaagcatccggccggcggcaagccgcataaaaccaaaaag
acttggcatcccgccgactga
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