Candidatus Viadribacter manganicus: ATE48_14275
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Entry
ATE48_14275 CDS
T04422
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbot
Candidatus Viadribacter manganicus
Pathway
cbot03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ATE48_14275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbot03021
]
ATE48_14275
03400 DNA repair and recombination proteins [BR:
cbot03400
]
ATE48_14275
Enzymes [BR:
cbot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ATE48_14275
Transcription machinery [BR:
cbot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ATE48_14275
DNA repair and recombination proteins [BR:
cbot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ATE48_14275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ANP46998
UniProt:
A0A1B1AKA7
LinkDB
All DBs
Position
2796934..2801025
Genome browser
AA seq
1363 aa
AA seq
DB search
MTLSYTGKKRIRKSFGKIPEAGSMPNLIEVQKSSYDQFLQKDGRSYDRIDEGLQAVFKSV
FPIRDFSDRAVLEYVSYEFEEPKFDVEECQQRDMTYAAPLKVKLRLIVFETDEETGAKSV
KDIKEQDVYLGDIPLMTDKGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA
RVIPYRGSWLDFEFDAKDIMFVRIDRKRKLPATTLLYALGMSSEQILATFYQTSIYKRVK
AGWTTKYRAERWRGVKPTYDLVDAKTGKVVAEAGKKISARNANKLVEDGVVDIQVPSEDL
FDRYIAEDIVNPETGEIYVEAGDALSENVLATLIEAGIHDLPILDIDPATVGPYIRSTLK
LDKNENREQALFDIYRVMRPGEPPTPETAETLFNSLFSDGERYDLSAVGRVKMNMRLGLD
TDDTVRVLRLEDILEVLRTLTDLRDGRGEVDDIDNLGNRRVRSVGELMENQYRVGLLRME
RAIKERMSSVDIETVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYR
KVVNGKPSKDIVYLSAMEEAKHKIAQANAIIDEKGNLSEEFVQARENGEAQLIAREELDL
MDVSPKQVVSVAAALIPFLENDDANRALMGSNMQKQAVPLLRADAPIVGTGMEGVVARDS
GATITARRTGIVEQVDSQRIVVRATEERDATKPGVDIYRLRKFQRSNQNTCITQRPIVRV
GDVVRADDIIADGPSTELGELALGRNVLVAFMPWNGYNFEDSILISERIVKDDVFTSIHI
DEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAELEPGDILVGKVMPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGVDKDQRALQIEKEEI
ERLAKDRDDELAILERNIFGRLEEILIGKQAASGPKGFKKGEITAEGLEPFSKGQWWQFG
IEDENAMAEIEALKKQYDDAKKRLDARFSDKVDKLTRGDELPPGVMKVVKVFVAVKRKLQ
PGDKMAGRHGNKGVISKIVPVEDMPFLDDGTHVDIVLNPLGVPSRMNVGQILETHLGWAC
AGIGKQVRNALESFERDGDRKPLDAKLKEIYGKEELPKSTEELRELAQNISKGVPIATPV
FDGAKDADIRAMLKDAGFAETGQVMLKDGTTGETFKRPVTVGYIYMLKLHHLVDDKIHAR
SIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYE
AITRGHDTFEAGIPESFNVLVKEMRSLGLNVELVDGTRLKAAE
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgactctgtcgtacaccggtaagaagcgtattcgtaagtcgttcgggaagatccccgaa
gcaggttcgatgccgaacctgattgaggtgcaaaaaagctcctacgatcaattcctgcaa
aaagacgggcggtcgtacgatcgcatcgacgaaggtttgcaggctgttttcaagtcagtt
ttcccgatccgtgatttctcggatcgcgccgttctcgaatacgtctcgtatgaattcgaa
gagccgaagtttgacgtcgaagagtgccaacagcgcgacatgacctacgcagctcccttg
aaggtgaagctgcgcctcatcgttttcgaaaccgacgaagagacgggcgcgaagtcggtc
aaggacatcaaggaacaagacgtctatctcggcgacatcccgctgatgacggacaaggga
acgttcgtcgtgaacggcaccgagcgcgtgatcgtgtctcagatgcaccgttcgccgggc
gtgttcttcgatcacgacaagggcaagacgcacgcttcgggcaagttgctcttcgctgcg
cgcgtcatcccgtaccgcggctcatggctcgacttcgaattcgacgccaaggacatcatg
ttcgtgcgtatcgaccggaagcgcaagctgccggcgacgacgctgctctacgcgctcggc
atgtcgagcgagcaaatccttgcgaccttctatcagacctcgatctacaagcgcgtgaag
gcgggctggaccacgaagtaccgcgccgaacgctggcgcggtgtgaagccgacctacgat
ctcgtcgacgccaagaccggcaaggtcgtcgccgaagcgggcaagaagatctcagcgcgc
aacgccaacaagctcgtcgaagatggcgtcgtcgatatccaagtgccctcggaagacctg
ttcgaccgctacattgccgaagatatcgtcaacccggaaaccggtgagatctacgtcgaa
gccggtgacgcgcttagcgagaacgtgctggcgactttgatcgaagccggcatccacgat
ctaccgatcctcgacatcgatccggcgaccgttggtccgtacatccgcagcacgctgaag
ctcgacaaaaacgagaaccgcgagcaagcgctgttcgatatctatcgcgtgatgcgtccg
ggtgaaccgccgacgccggaaacggccgagacgctgttcaactcgttgttctcggacggc
gagcgctacgatctttccgcggttggccgcgtgaagatgaacatgcgcctgggtctcgat
accgacgacaccgttcgcgtcctgcgccttgaggatatactcgaagtgctgcgtacgctg
accgatctgcgtgacggccgcggcgaggtcgatgacatcgataatctcggcaaccgccgc
gtgcgttcggtcggcgaactgatggaaaatcagtatcgcgtcggcctgctgcgcatggag
cgcgcgatcaaggaacgtatgtcgtcggtcgacatcgaaaccgtgatgccgcacgacctg
atcaacgccaagccggccgccgccgccgtgcgtgagttctttggttcttcgcagctctcg
cagttcatggaccaaaccaatccgctctccgagatcacgcacaagcgtcgtctctcggcg
ctcggcccgggtggcctgacccgtgagcgcgcgggcttcgaagtccgcgacgtgcacccg
acgcactacggccgcatctgcccgatcgaaacgccggaaggcccgaacatcggtctgatt
aactcgcttgcgacgcacgcccgcgtgaacaagtacggcttcatcgaaagcccgtatcgc
aaggtcgtcaacggcaagccgtcgaaggacatcgtctatctgtcggcgatggaagaggcc
aagcacaagatcgcgcaggccaacgccatcatcgacgagaagggcaacctctcggaagag
ttcgtgcaggcccgtgaaaacggcgaagcccagctcatcgcgcgtgaagaactcgatctc
atggacgtgtcgccgaagcaggttgtttcggtcgccgccgcgctcatcccgtttctcgag
aacgatgacgctaaccgcgcgctcatgggttcgaacatgcaaaagcaagcggtgccgttg
ctccgcgctgatgcgccgatcgtcggcacgggcatggaaggcgtggtcgcgcgcgattca
ggcgcaaccatcaccgcgcgccgcaccggcatcgtcgagcaagtggacagccaacgtatc
gttgtgcgcgccaccgaagagcgcgacgccaccaagcctggcgtcgatatctatcgtctg
cgcaagttccagcgctcgaaccaaaacacctgcatcacgcagcgcccgatcgttcgcgtc
ggtgacgttgtgcgcgccgacgacattatcgctgatggtccgtcgacggagttgggtgag
ttggcgcttggccgtaacgtgctcgtcgcgttcatgccgtggaacggctacaactttgaa
gactcgatcttgatctctgagcgcatcgtcaaagacgatgtgttcacctcgatccacatc
gatgaattcgaagtcgccgcccgcgacacgaaactgggtccggaagaaatcacgcgcgac
atcccgaacgtcggtgaagaagcgctgcgcaacctcgacgaagccggcattgtcgccatc
ggcgccgagcttgagccgggcgatattctcgtcggtaaggtgatgccgaagggcgaaagc
ccgatgacgccggaagaaaagctcctgcgcgccatcttcggtgaaaaggccagcgacgtg
cgtgacacgtcattgcgtctgccgccgggcgtcagcggtactgtcgtcgaagtgcgcgtg
ttcaaccgccatggcgtcgataaggatcaacgcgcgctgcagatcgagaaggaagaaatc
gaacgcttggcgaaggaccgcgacgacgaactcgcgatcctcgagcgcaacatcttcggc
cgtctcgaggaaatcctgatcggcaagcaagctgcgtcaggcccgaagggcttcaagaag
ggcgagatcacggccgaaggccttgagccgttctcgaagggccagtggtggcagttcggc
atcgaagacgaaaacgcgatggccgaaatcgaagcgctcaagaagcagtacgacgacgcc
aagaagcgtctcgatgcgcgcttcagcgacaaggtcgataagctcacccgcggcgatgaa
ttgccgccgggcgtgatgaaggtcgtcaaagtgttcgtcgcggtgaagcgcaagctgcag
ccgggtgacaagatggccggccgtcacggcaacaagggcgtcatctcgaagatcgtgccg
gtggaagacatgccgttcctcgacgacggcacacatgtcgacatcgttctgaacccgctc
ggcgtgccgagccggatgaacgtcggtcagatcctcgaaacgcacttgggttgggcttgc
gccggcatcggtaagcaggttcgcaacgcactcgaatccttcgagcgcgatggcgatcgc
aagccgctcgacgccaagctgaaggaaatctacggcaaggaagagctgccgaagtcgacc
gaagaattgcgggaactcgcgcagaacatctcgaagggtgttccgatcgcgactccggtg
ttcgacggcgccaaggacgcagatatccgcgcgatgctgaaggatgcgggctttgccgag
accggccaagtcatgctgaaggacggcaccacgggcgagacgttcaagcgtcctgtcacc
gtcggctacatctacatgctgaagctgcaccacttggtggacgacaagatccacgcccgc
agcatcggaccgtactcgctcgtcacgcagcagccgttgggtggtaaggcgcagttcggc
ggtcagcgcttcggcgaaatggaagtgtgggcgctcgaagcttacggcgcggcctacacg
ctccaggaaatgctgacggtgaagtcggacgacgtcgctggccgtaccaaagtctacgag
gccatcacgcgcggccacgacacgttcgaagcgggtatccccgagtcgttcaacgtgctc
gtgaaggaaatgcgctcgctcggccttaacgtggaattggtcgacggcacgcgcctgaag
gcagccgagtaa
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integrated database retrieval system
