Candidatus Viadribacter manganicus: ATE48_14280
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Entry
ATE48_14280 CDS
T04422
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbot
Candidatus Viadribacter manganicus
Pathway
cbot03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ATE48_14280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbot03021
]
ATE48_14280
03400 DNA repair and recombination proteins [BR:
cbot03400
]
ATE48_14280
Enzymes [BR:
cbot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ATE48_14280
Transcription machinery [BR:
cbot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ATE48_14280
DNA repair and recombination proteins [BR:
cbot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ATE48_14280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ANP46999
UniProt:
A0A1B1AKA3
LinkDB
All DBs
Position
2801136..2805293
Genome browser
AA seq
1385 aa
AA seq
DB search
MNQELINNTFGNNQPPAPVFDQIKISIASPEQIKSWSFGEIKKPETINYRTFKPERDGLF
CARIFGPQKDYECTCGKYKRMKYKDIICEKCGVQVTLARVRRERMGHIELAAPVAHIWFL
KSLPSRIALMLDMALKDIEKVLYFEQYIVLEPGLTPLEAKQLLTEEDYIKAQDEYGEDSF
TASIGAEAVRELLMALNLEKEAEQLRKEIAESTSELKPKKLAKRLKLVEAFIRSGNKPEW
MILTMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEK
RMLQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIV
VGPDLKLHQCGLPKKMALELFKPFIYARLDIKGLSGTVKQSRRMVEKERPEVWDVLEEVI
REHPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QLEARVLMMSTNNILSPANGKAIIVPSQDIVLGLYYLSLMKEGEPGEGKLFGSIGEIESA
LEAGVVTLHTKIKARYETVDADGKPIRKTIDTTPGRMKLAEVLPKHPKVSYNLLDQTLTK
KEIGNLIDNVYRFCGQKATVIFADRIMQLGFKEAAKAGISFGMADMVVPKAKETLVEETR
KRASEYEQQYADGLITKGEKYNKVVDAWSKCTDKVADAMMEEASKPARLKDGRLGELNSV
FMMAHSGARGSKNQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKG
LADTALKTANSGYLTRRLVDVAQDCIITEEDCGTQDGIQMTAVIDGADIVVSLGTRILGR
TAALPINDPGTGKQLVPAGGFLDEDTVQLIEKAGVQAVKVRSVLTCETRTGVCGSCYGRD
LARNTQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLAESSVMESAHDGSIHLIDR
NTVKNAQGDLIVMSRNMKISVVDEDGKERQSFKPPFGARLKVDEKSKIKRGDRIAEWDPY
ATPILTETAGKVRFEDLTEGVAVRDEFDEATGISSKVVIDWRSTTKGSELKPSISVLNAK
GVAVKTYSLPVGAILSVADGDDVTPGQDLARMPTGGAKTRDITGGLPRVAELFEARRPKD
HAIISEGDGRVEFGKDYKNKRRLRVVPEDESLDAIEYMIPKGKHIPVQEGDFVKKGDYLL
DGNPAPQDILSIMGVEALANYLVEEIQKVYRLQGVPINDKHIEVIVRQMLQKVEIMEAGD
TEFLKGEAVEALDLEDENKRVQELGLKPATAQPMLLGITKASLQTRSFISAASFQETTRV
LTEAASYGKSDTLEGLKENVIVGRLIPAGTGGQLRRYQKLAAERDAQLAIERGEEARLTQ
PEAAE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagagctgatcaacaacaccttcggcaacaatcaaccgccggcgcccgtgttc
gatcagatcaagatctcgatcgcgagcccagagcagatcaagtcctggagcttcggcgag
atcaagaagcctgagacaatcaactaccgcacgttcaagcctgagcgtgacggcctgttc
tgcgcgcgcatcttcggtccgcaaaaggactacgagtgcacgtgcggcaagtacaagcgg
atgaagtacaaggacatcatctgcgaaaagtgcggcgtgcaagttacgctggcgcgtgtc
cgccgcgaacgcatgggccatatcgagctcgctgcgccggtcgcgcacatctggttcttg
aagtcgctgccgagccgcatcgcgctcatgctcgatatggcgctgaaggacatcgagaag
gttctctatttcgagcaatacatcgtgctcgaaccgggtctgacgccgctcgaagccaag
cagctgctgaccgaagaagactacatcaaagcgcaggacgagtacggcgaagacagcttc
accgcctcgatcggcgctgaagccgtgcgtgaattgctgatggcgctcaacctcgaaaaa
gaggctgagcagctgcgcaaggaaatcgccgagtccacgtcggaactgaagccgaagaag
ctggccaagcgcctgaagctcgtcgaagctttcattcgctcgggcaacaagccggagtgg
atgatcctgacgatggtgccggtgatcccgccggaactgcgtccgctcgtgccgctcgat
ggcggccgtttcgcgacgtcggatctgaacgatctttaccgccgcgtcatcaaccgtaac
aaccgccttaagcggctgatggagctccgcgcgccggacatcatcatccgcaacgaaaag
cggatgctgcaggaagctgtcgatgcgctgttcgacaacgggcgccgtggccgtgtcatc
accggcgccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggc
cgcttccgtcagaacttgctcggtaagcgcgtcgactattctggccgttcggtcatcgtc
gtcggtccggatctgaagcttcaccagtgcggcctgccgaagaagatggcgctcgaactg
ttcaagccgttcatctacgcgcgcctcgacatcaagggcctctcgggcaccgtgaagcaa
tcgcgccgcatggtcgaaaaggagcgtcctgaagtttgggatgtgctcgaagaagtcatc
cgcgagcacccggttcttctgaaccgcgccccgaccctccaccgcttgggcatccaagcg
ttcgagccgaagttgattgaaggcaaggcgatccagcttcacccgctggtttgcgccgcg
ttcaacgccgacttcgacggcgaccaaatggccgtgcacgttccgctgtcgctcgaagcg
cagttggaagcgcgcgtgctgatgatgtcaacgaacaacatcctctcgccggcgaacggc
aaggcgatcatcgtgccgtcgcaggatatcgttctcggtctctactatctttcgctcatg
aaagaaggcgagccgggcgagggcaagctgttcggttcgatcggtgaaatcgagtctgcg
ctggaagctggcgtcgtcacgctgcacaccaagatcaaggcgcgttacgaaacggtcgat
gccgatggcaagccgatccgtaagacgatcgacaccacccctggccgcatgaagcttgcc
gaggttctgccgaagcacccgaaggtgagctacaacctcttggatcagacgctgaccaag
aaggaaatcggcaacctgatcgacaacgtctatcgtttctgcggccagaaggcgacggtg
atcttcgccgaccgcatcatgcaactcggcttcaaggaagctgccaaggccggcatttcg
ttcggcatggcggacatggtcgtgccgaaggcaaaggaaacgctggtcgaggaaacgcgt
aagcgcgcgtccgagtacgagcagcaatatgccgatggtctcatcaccaagggcgaaaag
tacaacaaggttgtcgacgcctggtcaaagtgcaccgacaaagtcgctgacgcgatgatg
gaagaggcgtcaaagccggctcgtctgaaggacggccgtctgggcgaactcaactccgtc
ttcatgatggcgcactcgggcgcacgtggttcgaagaaccagatgaagcagctcgccggc
atgcgcggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaac
ttcaaagagggtctctcggttctcgaatacttcaactcgacccacggcgctcgtaagggc
ctcgcggacaccgcgctgaagaccgcgaactcgggctacctcacgcgtcgtctcgtcgac
gtcgcgcaagactgcatcatcaccgaagaagattgcggcacccaggacggcatccagatg
acggctgtcatcgacggcgccgacatcgtcgtctcgctcggcacgcgcatcctcggtcgt
acggccgcgctgccgatcaacgatccgggtacgggcaagcagctcgttccggctggtggc
ttcctcgacgaagacaccgtgcagctgatcgagaaggctggcgttcaagccgtgaaggtc
cgttcggtgctgacgtgcgaaacccgcacgggcgtttgcggttcctgctatggccgcgac
ctcgcgcgcaacacgcaggtcaatatcggcgaagctgtcggcgtcatcgcggcgcaatcg
atcggcgagccgggtacgcagctcacgatgcgtacgttccacatcggcggcgcggcccag
ttggctgagtcgtcagttatggaatcggcgcatgatggctcgatccacctcatcgatcgc
aacacggtgaagaacgcccaaggcgatctcatcgtgatgagccgcaacatgaagatctcg
gtcgtcgatgaagacggcaaggagcgtcaaagcttcaagccgccgttcggcgcacgtctg
aaggttgatgaaaagtcgaagatcaagcgcggcgatcgcatcgccgagtgggatccctac
gcaacgccgatcctgaccgaaacggcaggcaaggtgcgcttcgaggatttgaccgagggc
gtcgctgtccgcgacgagttcgacgaggccacgggcatttcgtcgaaggtcgtcatcgac
tggcgttcgaccacgaagggctcggaactaaagccgtcgatctcggtgctcaacgctaag
ggcgttgcagtgaagacgtactcgttgccggtcggcgccattctctcggtggccgatggt
gatgacgttacccctggccaagacctcgcacgcatgccgacgggcggcgctaagacccgc
gacatcaccggcggtctgccgcgcgtcgcggaactgttcgaagctcgccgtccgaaggac
cacgcgatcatctccgaaggcgatggccgcgtagagtttggcaaggactacaagaacaag
cgtcgtctgcgcgttgtgccggaagacgaaagcctcgacgcgatcgagtacatgatcccg
aagggcaagcacattccggtgcaagaaggcgacttcgtgaagaagggcgattacctgctc
gacggcaaccccgcgccgcaggacatcctctcgatcatgggcgtcgaagcgcttgcgaat
tacctcgttgaggaaattcagaaggtgtaccgcctgcaaggcgtgccgattaatgacaag
cacatcgaagtgatcgttcgccagatgcttcagaaggtcgagatcatggaagcgggcgat
accgagttcctcaaaggggaagcggtcgaagcgctcgatctcgaagacgagaacaagcgt
gttcaagagcttggtctaaagccggcgacggctcagccgatgctgctcggcatcactaag
gccagcttgcagacgcgttcgtttatctcggcagcgtcgttccaagaaaccacgcgcgtg
ctcaccgaggctgcctcttacggcaagtcggacacgctcgaaggtctcaaggaaaacgtc
atcgtcgggcgtctcatcccggccggtacgggtggtcagttgcgccgttaccagaagctc
gccgccgaacgcgatgcgcaactggcgatcgagcgcggtgaagaggctcgtctgacgcag
ccagaagcggccgaataa
DBGET
integrated database retrieval system
