Candidatus Viadribacter manganicus: ATE48_15235
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Entry
ATE48_15235 CDS
T04422
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbot
Candidatus Viadribacter manganicus
Pathway
cbot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE48_15235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbot03019
]
ATE48_15235
Enzymes [BR:
cbot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATE48_15235
Messenger RNA biogenesis [BR:
cbot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATE48_15235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Flavi_DEAD
HEM4
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ANP47171
UniProt:
A0A1B1AKW1
LinkDB
All DBs
Position
2981887..2983281
Genome browser
AA seq
464 aa
AA seq
DB search
MTTFQDLGVSAPILKALESEGYTKPTPIQIQALPIVRKGGDLIGLAQTGTGKTAAFALPI
LDRLHKDRKFAGEKSCRTLVLAPTRELAAQIGDSFRAYGKYLGLSTAVVFGGASMHKQKQ
AMFRGVDILVATPGRLLDHVSQRSVRLDKVEILVLDEADHMLDMGFIHDLRKIATILPRQ
RQTLFFSATMPPSIEELAAQFLDKPDRIAVTPVSSTAERVEQVVVHVDQSKKQDLLHAML
ADKSIKRALVFARTKHGADRVAKKLESAGFSADAIHGNKSQGQRTRALDGFKKGQTRILV
ATEVAARGIDVDDITHVFNFDLPNVPEQYVHRIGRTARAARTGIAISFCAPDERAYLRDI
EKLTKQPVPVLETDMSLRAPRADERVVRPKGPAGRSGSVHPARKKSQAKHHASEAHGKAH
AKQGHGPTRSRDEGDRRDRKGNAVWSNNGAPPKYRKPTRRPTSV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacattccaagatctcggcgtgtctgcgccgatcctcaaggcgctcgagtctgag
ggctacaccaagccgactccgattcaaatccaagcgcttcccatcgtgcgcaagggcggg
gacctcattggtcttgcccaaaccggcaccggcaaaaccgccgccttcgcgctgccgatc
cttgatcgcctgcataaggaccgcaagttcgccggcgagaagtcgtgccgcacgctggtg
ctcgcgccgacgcgcgaactcgccgcgcaaatcggcgatagcttccgcgcttacggcaag
tatctcggcctcagcaccgccgtcgtgttcggcggcgcctcgatgcacaagcaaaagcaa
gccatgttccgcggcgtcgacattctcgtcgccacgcccggccgtctgcttgaccacgtc
agccaacgcagcgtgcgtctcgacaaggtcgaaatcctcgttctcgacgaagccgatcac
atgctcgacatgggcttcatccacgatctccgcaaaatcgcgaccatcctgccgcgccag
cgccagacgctgttcttctcggccactatgccgccttcgatcgaagagctcgccgcgcaa
ttcctcgataagccggatcgcatcgccgtcacgccggtgtcctcaaccgcagagcgcgtt
gagcaagtcgtcgtgcacgtcgatcaatccaaaaagcaggacctcctgcacgccatgctc
gccgacaagtcgatcaagcgtgcgctggtattcgcccgcaccaagcacggcgccgatcgc
gttgcgaagaagctcgaaagcgccggcttcagcgccgacgccatccacggcaacaagagc
cagggccaacgcacccgtgcgctggacggcttcaagaagggccagacgcgcatcctcgtc
gccaccgaagtcgccgctcgcggcatcgacgtcgacgacatcacgcacgtcttcaacttc
gacttgccgaacgtgccagagcaatacgtgcaccgcatcggccgcaccgcgcgcgccgct
cgcaccggcatcgccatttcgttctgcgctcccgatgagcgcgcgtatctgcgcgacatc
gagaagctgaccaagcagcccgtcccggttctcgagaccgacatgtcgctccgcgccccg
cgcgctgatgaacgtgtcgttcgcccgaagggtccggctggccgctctggctcggtgcat
ccggcccgcaagaagtcgcaggccaagcaccacgcttcggaagcgcacggcaaagcccac
gccaagcaaggccacggcccgacgcgttcgcgcgacgagggtgaccggcgcgaccgcaag
ggcaatgccgtctggtcgaacaacggcgcaccgccgaagtatcgcaagccaacgcgccgc
ccgacgagcgtctaa
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